Assay Details
Target Gene Details
Entrez Gene ID: | 10752 |
Gene Name: | cell adhesion molecule L1 like |
Gene Aliases: |
CALL, L1CAM2 |
Location: |
Chr.3:196588-409417 on Build GRCh38 |
Assay Gene Location: | Within Intron 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CHL1 | NM_001253387.1 | NP_001240316.1 | ||
NM_006614.3 | NP_006605.2 | |||
XM_006712938.1 | XP_006713001.1 | |||
XM_006712939.3 | XP_006713002.1 | |||
XM_006712940.3 | XP_006713003.1 | |||
XM_011533292.1 | XP_011531594.1 | |||
XM_011533294.1 | XP_011531596.1 | |||
XM_011533295.1 | XP_011531597.1 | |||
XM_011533296.1 | XP_011531598.1 | |||
XM_017005566.1 | XP_016861055.1 | |||
XM_017005567.1 | XP_016861056.1 | |||
XM_017005569.1 | XP_016861058.1 | |||
XM_017005570.1 | XP_016861059.1 | |||
XM_017005571.1 | XP_016861060.1 | |||
XM_017005572.1 | XP_016861061.1 | |||
XM_017005573.1 | XP_016861062.1 | |||
AB209329.1 | BAD92566.1 | |||
AF002246.1 | AAB60937.1 | |||
AK126878.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1010970 | Chr.3:188327 - 1623352 on Build GRCh38 | Gain |
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nsv433357 | Chr.3:274734 - 284416 on Build GRCh38 | Gain |
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esv2759122 | Chr.3:29482 - 756820 on Build GRCh38 | Gain+Loss |
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nsv818121 | Chr.3:272855 - 283727 on Build GRCh38 | Gain |
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esv3594872 | Chr.3:36658 - 319672 on Build GRCh38 | Loss |
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nsv526340 | Chr.3:21733 - 2305176 on Build GRCh38 | Loss |
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esv3594893 | Chr.3:242814 - 379641 on Build GRCh38 | Loss |
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esv2667629 | Chr.3:39576 - 1039187 on Build GRCh38 | Deletion |
![]() ![]() ![]() ![]() ![]() |
nsv428412 | Chr.3:29467 - 326726 on Build GRCh38 | Gain |
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nsv1013825 | Chr.3:256421 - 312812 on Build GRCh38 | Loss |
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nsv589283 | Chr.3:192626 - 321571 on Build GRCh38 | Gain |
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nsv999459 | Chr.3:230573 - 288287 on Build GRCh38 | Loss |
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nsv1005290 | Chr.3:247092 - 949319 on Build GRCh38 | Loss |
![]() ![]() ![]() |
nsv834589 | Chr.3:235505 - 395503 on Build GRCh38 | Gain |
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dgv4608n100 | Chr.3:18655 - 438490 on Build GRCh38 | Gain |
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esv2762308 | Chr.3:271980 - 285057 on Build GRCh38 | Gain |
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esv2763731 | Chr.3:243604 - 1386714 on Build GRCh38 | Gain+Loss |
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nsv1004600 | Chr.3:244100 - 607771 on Build GRCh38 | Loss |
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dgv8152n54 | Chr.3:245736 - 278518 on Build GRCh38 | Loss |
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dgv4613n100 | Chr.3:52474 - 1799230 on Build GRCh38 | Loss |
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esv3893591 | Chr.3:264957 - 301339 on Build GRCh38 | Loss |
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nsv10238 | Chr.3:271826 - 285163 on Build GRCh38 | Gain |
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nsv589242 | Chr.3:47730 - 388999 on Build GRCh38 | Gain |
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dgv4614n100 | Chr.3:214575 - 294771 on Build GRCh38 | Gain |
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![](/order/genome-database/details/genotyping/assets/img/arrow_icon_up_black.png)
More Information
Additional Information:
For this assay, SNP(s) [rs79180872] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
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Panther Classification:
Gene Ontology Categories:
![](/order/genome-database/details/genotyping/assets/img/arrow_icon_up_black.png)