Hs07536489_cn

• Gene Symbol: C11orf21
• Assay Reference Genome Location: Chr.11:2299754 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 29125
• Gene Name: chromosome 11 open reading frame 21
• Gene Aliases: -
• Location: Chr.11:2296277-2301913 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C11orf21	NM_001142946.1			NP_001136418.1
	NR_024621.1
	XM_011520034.1			XP_011518336.1
	AB029488.1			BAA89482.1
	AK290921.1
	AK310172.1

Target Gene Details

• Entrez Gene ID: 10077
• Gene Name: tetraspanin 32
• Gene Aliases: ART1, PHEMX, PHMX, TSSC6
• Location: Chr.11:2299480-2318201 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN32	XM_017017067.1			XP_016872556.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv553083	Chr.11:2299609 - 2300207 on Build GRCh38	Gain+Loss	TSPAN32 C11orf21
nsv469928	Chr.11:2294174 - 2473462 on Build GRCh38	Loss	CD81-AS1 TSSC4 KCNQ1 TRPM5 TSPAN32 C11orf21 CD81
nsv553085	Chr.11:2299654 - 2300906 on Build GRCh38	Gain	TSPAN32 C11orf21
nsv553082	Chr.11:2296721 - 2300906 on Build GRCh38	Loss	TSPAN32 C11orf21
esv29043	Chr.11:2299582 - 2300327 on Build GRCh38	Gain	TSPAN32 C11orf21
nsv553081	Chr.11:2291007 - 2312445 on Build GRCh38	Loss	TSPAN32 C11orf21
nsv467651	Chr.11:2289922 - 2301432 on Build GRCh38	Loss	TSPAN32 C11orf21
nsv951285	Chr.11:2256071 - 2310670 on Build GRCh38	Deletion	TSPAN32 C11orf21 ASCL2
nsv553047	Chr.11:1733170 - 2418537 on Build GRCh38	Gain	IGF2 SNORD131 TSSC4 IGF2-AS TSPAN32 LINC01219 MRPL23-AS1 MRPL23 HOTS IFITM10 CD81-AS1 MIR4686 MIR4298 MIR483 TNNI2 INS LSP1 SYT8 INS-IGF2 TNNT3 TH ASCL2 MIR7847 LINC01150 TRPM5 C11orf21 CTSD H19 CD81 MIR675

More Information

Additional Information:

For this assay, SNP(s) [rs115451105] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cytoskeleton organization
cell surface receptor signaling pathway
integrin-mediated signaling pathway
cell-cell signaling
negative regulation of cell proliferation
negative regulation of myeloid dendritic cell activation
defense response to protozoan
regulation of defense response to virus
platelet aggregation

Function(s)

molecular_function