Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Intron 7 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
XM_017026666.1 | XP_016882155.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
BQ446114.1 | ||||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | PRPF31 TFPT TARM1 OSCAR VSTM1 NDUFA3 |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | MIR935 CACNG6 TARM1 CACNG8 VSTM1 |
nsv1057516 | Chr.19:53986233 - 54046901 on Build GRCh38 | Gain | CACNG6 CACNG8 VSTM1 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | MIR935 CACNG7 CACNG6 CACNG8 VSTM1 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | PRPF31 MIR517C MIR373 NLRP12 MIR520H BIRC8 MIR521-1 ZNF525 MIR524 TSEN34 MIR517B MIR935 MIR518B MIR523 MIR526B MIR521-2 MIR519C FAM90A27P MIR1283-1 MIR519A2 MIR519E ZNF665 ZNF845 MIR518A1 MIR519D MIR520F VSTM1 MIR371A MIR518D MBOAT7 MIR498 DPRX TPM3P9 LILRA6 MIR518A2 MIR520A LENG1 LOC105372457 ZNF813 OSCAR MIR512-1 ZNF761 MIR515-1 MIR520G MIR526A2 LOC284379 TFPT MIR516B2 ZNF331 TMC4 LILRB3 CNOT3 MIR525 MIR371B MIR518F CACNG7 MIR516B1 CACNG6 MIR518C MIR512-2 ZNF677 MIR515-2 PRKCG MIR4752 MIR1283-2 TARM1 ZNF765 MIR520D ZNF818P MYADM MIR520E MIR516A1 MIR517A CACNG8 MIR519B MIR520C LILRB2 MIR526A1 LILRB5 MIR519A1 NDUFA3 MIR527 MIR522 MIR372 LILRA5 VN1R2 MIR518E RPS9 MIR516A2 VN1R4 MIR1323 MIR520B |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | PRPF31 MIR935 TFPT CACNG6 TARM1 CACNG8 OSCAR VSTM1 NDUFA3 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |