Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Intron 7 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
XM_017026666.1 | XP_016882155.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
BQ446114.1 | ||||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | VSTM1 TFPT NDUFA3 TARM1 PRPF31 OSCAR |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | CACNG8 VSTM1 TARM1 CACNG6 MIR935 |
nsv1057516 | Chr.19:53986233 - 54046901 on Build GRCh38 | Gain | CACNG8 VSTM1 CACNG6 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | CACNG8 VSTM1 CACNG6 MIR935 CACNG7 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR525 MIR517A CACNG6 MIR521-2 LOC105372457 MIR373 VN1R2 ZNF665 MIR522 MIR518F MIR520B MIR520E MIR515-2 TARM1 LILRB3 MIR516A2 ZNF761 LILRA5 ZNF813 MIR372 RPS9 ZNF765 MIR518A1 MIR1323 MIR512-2 MIR518C ZNF677 MIR520D MIR498 MIR371B MYADM LILRB2 MBOAT7 MIR512-1 MIR4752 MIR520F MIR517B LILRA6 CNOT3 MIR519D NDUFA3 LILRB5 MIR935 MIR524 MIR518A2 PRKCG MIR520H ZNF818P MIR516B1 MIR518D MIR516A1 MIR520G MIR519C TMC4 LENG1 MIR518B MIR518E MIR527 MIR526A1 DPRX BIRC8 MIR520C MIR515-1 FAM90A27P MIR521-1 MIR520A CACNG7 MIR1283-2 MIR526A2 MIR516B2 MIR523 MIR526B ZNF845 MIR519A1 TPM3P9 TFPT PRPF31 MIR519A2 OSCAR VN1R4 MIR371A CACNG8 VSTM1 MIR517C MIR519E NLRP12 MIR1283-1 ZNF331 MIR519B ZNF525 LOC284379 TSEN34 |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | CACNG8 VSTM1 TFPT NDUFA3 TARM1 CACNG6 MIR935 PRPF31 OSCAR |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |