Hs07125426_cn

• Gene Symbol: TFPT
• Assay Reference Genome Location: Chr.19:54111060 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 29844
• Gene Name: TCF3 fusion partner
• Gene Aliases: FB1, INO80F, amida
• Location: Chr.19:54107013-54115675 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TFPT	NM_001321792.1			NP_001308721.1
	NM_013342.3			NP_037474.1
	XM_005278261.1			XP_005278318.1
	AF052052.1			AAD45182.1
	AK310627.1
	AK310647.1
	BC004281.1			AAH04281.1
	BC007776.2			AAH07776.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1056177	Chr.19:54073048 - 54112306 on Build GRCh38	Gain	TARM1 OSCAR TFPT NDUFA3
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	VSTM1 TARM1 OSCAR PRPF31 TFPT NDUFA3
nsv515623	Chr.19:54102901 - 54179150 on Build GRCh38	Loss	MBOAT7 PRPF31 TFPT LENG1 CNOT3 NDUFA3 TMC4
nsv953613	Chr.19:54097214 - 54198733 on Build GRCh38	Deletion	TSEN34 OSCAR MBOAT7 PRPF31 TFPT LENG1 CNOT3 NDUFA3 TMC4
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR1283-2 MIR524 MIR523 ZNF813 MIR518A2 NLRP12 MYADM MIR519B MIR372 MIR498 MIR522 MIR518D MIR520C MIR520F ZNF845 MIR525 ZNF818P TFPT LENG1 MIR518B VN1R2 MIR521-1 MIR512-2 MIR520E MIR516A1 MIR517C TSEN34 CACNG6 MIR1323 TARM1 MIR516B2 NDUFA3 MIR516A2 MIR373 LOC105372457 LILRB5 MIR526B LILRA6 PRPF31 LILRB2 MIR371A MIR519A1 MIR517B VSTM1 MIR518A1 OSCAR FAM90A27P ZNF665 MIR519D MIR519E MIR520A MIR520H MIR512-1 MIR4752 MIR521-2 MBOAT7 MIR515-1 LILRB3 MIR518F CNOT3 MIR520G MIR519C TMC4 TPM3P9 MIR518E MIR1283-1 LOC284379 ZNF677 PRKCG ZNF331 MIR517A MIR515-2 MIR935 BIRC8 DPRX CACNG7 MIR519A2 ZNF761 MIR516B1 MIR520B VN1R4 MIR526A2 MIR527 LILRA5 RPS9 MIR520D MIR526A1 CACNG8 ZNF765 MIR518C ZNF525 MIR371B
nsv470157	Chr.19:54063999 - 54127773 on Build GRCh38	Loss	TARM1 OSCAR PRPF31 TFPT NDUFA3
esv3893246	Chr.19:54081109 - 54111207 on Build GRCh38	Gain	TARM1 OSCAR TFPT NDUFA3
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	CACNG6 VSTM1 TARM1 OSCAR PRPF31 MIR935 TFPT NDUFA3 CACNG8

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

DNA repair
DNA recombination
transcription, DNA-templated
regulation of transcription, DNA-templated
male gonad development
positive regulation of apoptotic process
apoptotic signaling pathway

Function(s)

DNA binding
protein binding
protein heterodimerization activity