Hs06936348_cn

• Gene Symbol: ARNTL2
• Assay Reference Genome Location: Chr.12:27346643 on build GRCh38
• Cytoband: 12p11.23

Target Gene Details

• Entrez Gene ID: 56938
• Gene Name: aryl hydrocarbon receptor nuclear translocator like 2
• Gene Aliases: BMAL2, CLIF, MOP9, PASD9, bHLHe6
• Location: Chr.12:27332854-27425813 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ARNTL2	NM_001248002.1			NP_001234931.1
	NM_001248003.1			NP_001234932.1
	NM_001248004.1			NP_001234933.1
	NM_001248005.1			NP_001234934.1
	NM_020183.4			NP_064568.3
	XM_006719112.3			XP_006719175.1
	XM_011520766.2			XP_011519068.1
	XM_011520768.2			XP_011519070.1
	XM_011520769.2			XP_011519071.1
	XM_017019666.1			XP_016875155.1
	XM_017019667.1			XP_016875156.1
	AF246960.1			AAL50339.1
	AF246961.1			AAL50340.1
	AF246962.1			AAL50341.1
	AF246963.1			AAL50342.1
	AK296706.1
	BC125061.1
	BC125062.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1406n100	Chr.12:27128236 - 27640822 on Build GRCh38	Gain	SMCO2 ARNTL2 ARNTL2-AS1 STK38L PPFIBP1
dgv2417n54	Chr.12:27068022 - 27638988 on Build GRCh38	Gain	SMCO2 C12orf71 ARNTL2 ARNTL2-AS1 STK38L PPFIBP1
esv3628933	Chr.12:27275994 - 27403117 on Build GRCh38	Gain	ARNTL2 ARNTL2-AS1 STK38L
nsv436825	Chr.12:27135971 - 27642579 on Build GRCh38	Insertion	SMCO2 ARNTL2 ARNTL2-AS1 STK38L PPFIBP1
esv2745664	Chr.12:27017516 - 27820117 on Build GRCh38	Deletion	MANSC4 SMCO2 KLHL42 C12orf71 REP15 ARNTL2 MRPS35 ARNTL2-AS1 MED21 STK38L PPFIBP1
nsv521872	Chr.12:27114021 - 27635541 on Build GRCh38	Gain	SMCO2 ARNTL2 ARNTL2-AS1 STK38L PPFIBP1
dgv271e199	Chr.12:27089700 - 27631451 on Build GRCh38	Deletion	SMCO2 ARNTL2 ARNTL2-AS1 STK38L PPFIBP1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

basic helix-loop-helix transcription factor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
circadian rhythm
entrainment of circadian clock
positive regulation of circadian rhythm
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter

Function(s)

transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcription factor activity, sequence-specific DNA binding
protein dimerization activity
E-box binding