Assay Details
Target Gene Details
Entrez Gene ID: | 5079 |
Gene Name: | paired box 5 |
Gene Aliases: |
ALL3, BSAP |
Location: |
Chr.9:36833274-37035949 on Build GRCh38 |
Assay Gene Location: | Within Exon 12 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PAX5 | NM_001280547.1 | 9 | 6173 | NP_001267476.1 |
NM_001280548.1 | 9 | 6188 | NP_001267477.1 | |
NM_001280549.1 | 8 | 6043 | NP_001267478.1 | |
NM_001280550.1 | 7 | 5956 | NP_001267479.1 | |
NM_001280551.1 | 7 | 5920 | NP_001267480.1 | |
NM_001280552.1 | 8 | 6086 | NP_001267481.1 | |
NM_001280553.1 | 8 | 6059 | NP_001267482.1 | |
NM_001280554.1 | 9 | 6146 | NP_001267483.1 | |
NM_001280555.1 | 8 | 5975 | NP_001267484.1 | |
NM_001280556.1 | 9 | 6109 | NP_001267485.1 | |
NM_016734.2 | 10 | 6275 | NP_057953.1 | |
NR_103999.1 | 9 | 6145 | ||
NR_104000.1 | 10 | 6202 | ||
XM_005251481.4 | 10 | 6896 | XP_005251538.1 | |
XM_011517896.2 | 11 | 7802 | XP_011516198.1 | |
XM_011517897.2 | 11 | 6957 | XP_011516199.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv6531 | Chr.9:36832805 - 36876608 on Build GRCh38 | Deletion | PAX5 MIR4540 |
nsv471306 | Chr.9:36740960 - 36848924 on Build GRCh38 | Loss | PAX5 MIR4475 |
More Information
Additional Information:
For this assay, SNP(s) [rs77189997] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |