Assay Details
Target Gene Details
Entrez Gene ID: | 9328 |
Gene Name: | general transcription factor IIIC subunit 5 |
Gene Aliases: |
TFIIIC63, TFIIICepsilon, TFiiiC2-63 |
Location: |
Chr.9:133030675-133058503 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GTF3C5 | NM_001122823.1 | NP_001116295.1 | ||
NM_001286709.1 | NP_001273638.1 | |||
NM_012087.3 | NP_036219.2 | |||
XM_005272234.3 | XP_005272291.1 | |||
XM_011519201.1 | XP_011517503.1 | |||
XM_017015315.1 | XP_016870804.1 | |||
XM_017015316.1 | XP_016870805.1 | |||
AF133124.1 | AAD41476.1 | |||
AJ420443.1 | ||||
AK000194.1 | BAA91001.1 | |||
AK024510.1 | ||||
AK055092.1 | ||||
AK097295.1 | BAC04993.1 | |||
AK225761.1 | ||||
AK293980.1 | ||||
AK311481.1 | ||||
AY007123.1 | AAG01991.1 | |||
BC009741.2 | AAH09741.2 | |||
BC011355.1 | AAH11355.1 | |||
BC017337.2 | AAH17337.1 | |||
BC030157.2 | AAH30157.2 | |||
BQ673969.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2739138 | Chr.9:132727483 - 135521553 on Build GRCh38 | Deletion | MIR3689D1 RALGDS LOC100130548 C9orf116 PPP1R26-AS1 SURF4 COL5A1-AS1 MIR3689F SNORD36A TMEM8C CACFD1 FCN1 MIR3689A MIR6877 SNORD141A CEL CELP COL5A1 MIR3689C DBH-AS1 LCN1 SARDH LOC101928525 WDR5 RNU6ATAC MIR3689D2 BRD3 TSC1 MIR3689B LOC105376306 LOC101448202 SPACA9 MIR3689E LOC100996574 MIR4669 MIR548AW GFI1B OLFM1 C9orf62 SNORD36C ADAMTS13 RXRA ADAMTSL2 STKLD1 OBP2B LOC101928193 SNORD24 PPP1R26 SURF2 LOC401557 MED22 SNORD36B LINC00094 ABO MRPS2 GTF3C5 VAV2 SURF1 FCN2 AK8 SURF6 RPL7A FAM163B DBH GBGT1 SLC2A6 REXO4 |
nsv6746 | Chr.9:133044293 - 133068877 on Build GRCh38 | Insertion | GTF3C5 CEL LOC100996574 MIR6877 |
nsv615596 | Chr.9:133030314 - 133080285 on Build GRCh38 | Loss | GTF3C5 CEL LOC100996574 MIR6877 LOC105376306 |
nsv831744 | Chr.9:132980050 - 133174043 on Build GRCh38 | Gain+Loss | GFI1B GTF3C5 RALGDS CEL CELP LOC100996574 MIR6877 SNORD141A LOC105376306 GBGT1 |
nsv508564 | Chr.9:133013830 - 133073076 on Build GRCh38 | Deletion | GTF3C5 CEL LOC100996574 MIR6877 SNORD141A LOC105376306 |
More Information
Additional Information:
For this assay, SNP(s) [rs112561557] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |