Assay Details
Target Gene Details
Entrez Gene ID: | 10675 |
Gene Name: | chondroitin sulfate proteoglycan 5 |
Gene Aliases: |
NGC |
Location: |
Chr.3:47562238-47580240 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CSPG5 | NM_001206942.1 | NP_001193871.1 | ||
NM_001206943.1 | NP_001193872.1 | |||
NM_001206944.1 | NP_001193873.1 | |||
NM_001206945.1 | NP_001193874.1 | |||
NM_006574.3 | NP_006565.2 | |||
AF059274.1 | AAC69612.1 | |||
AF461087.1 | AAQ04774.1 | |||
AF461088.1 | AAQ04775.1 | |||
AF461089.1 | AAQ04776.1 | |||
AK294621.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv3807 | Chr.3:47558395 - 47607814 on Build GRCh38 | Insertion | CSPG5 SMARCC1 |
nsv428417 | Chr.3:46638962 - 47778557 on Build GRCh38 | Loss | ELP6 ALS2CL PTH1R SETD2 CSPG5 PRSS43 PRSS50 KIF9-AS1 MYL3 PRSS42 PRSS46 SNORD13P3 NRADDP PRSS45 CCDC12 TMIE KLHL18 NBEAL2 SMARCC1 KIF9 PTPN23 SCAP |
More Information
Additional Information:
For this assay, SNP(s) [rs143321259] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |