Assay Details
Target Gene Details
Entrez Gene ID: | 49856 |
Gene Name: | WD repeat containing, antisense to TP73 |
Gene Aliases: |
WDR8 |
Location: |
Chr.1:3630767-3650107 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 5 - Exon 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
WRAP73 | NM_017818.3 | NP_060288.3 | ||
XM_005244754.1 | XP_005244811.1 | |||
XM_017001387.1 | XP_016856876.1 | |||
AB034912.1 | BAA92312.1 | |||
AK000437.1 | BAA91164.1 | |||
AK225525.1 | ||||
BC086311.1 | AAH86311.1 | |||
BX537591.1 | 2 | 1963 | ||
EF494669.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv410 | Chr.1:3635087 - 3667080 on Build GRCh38 | Insertion | WRAP73 TP73 |
nsv470687 | Chr.1:3356499 - 3763210 on Build GRCh38 | Loss | PRDM16 CCDC27 ARHGEF16 MIR551A TP73-AS1 WRAP73 MEGF6 TPRG1L TP73 |
nsv545128 | Chr.1:3630371 - 3700037 on Build GRCh38 | Loss | WRAP73 TP73 |
nsv1001715 | Chr.1:3627619 - 3769754 on Build GRCh38 | Loss | CCDC27 TP73-AS1 WRAP73 TPRG1L TP73 |
esv3585042 | Chr.1:3585575 - 4260083 on Build GRCh38 | Gain | SMIM1 CEP104 CCDC27 LINC01346 LRRC47 WRAP73 MEGF6 TPRG1L C1orf174 TP73 DFFB LINC01134 TP73-AS1 |
nsv1012423 | Chr.1:3477686 - 4747449 on Build GRCh38 | Gain | SMIM1 CEP104 CCDC27 LINC01346 ARHGEF16 MIR551A LRRC47 WRAP73 MEGF6 TPRG1L C1orf174 TP73 DFFB LOC284661 LINC01134 AJAP1 TP73-AS1 |
nsv951959 | Chr.1:3051037 - 3812036 on Build GRCh38 | Deletion | SMIM1 CCDC27 MIR4251 ARHGEF16 MIR551A LRRC47 WRAP73 MEGF6 TPRG1L TP73 LINC00982 LOC105378604 PRDM16 TP73-AS1 |
esv3585044 | Chr.1:3611044 - 3637348 on Build GRCh38 | Gain | WRAP73 MEGF6 TPRG1L |
esv3585045 | Chr.1:3611161 - 3686920 on Build GRCh38 | Gain | WRAP73 MEGF6 TPRG1L TP73 |
More Information
Additional Information:
For this assay, SNP(s) [rs200699124] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |