Genomic Map
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Target Gene Details
Entrez Gene ID: | 79643 |
Gene Name: | charged multivesicular body protein 6 |
Gene Aliases: |
VPS20 |
Location: |
Chr.17:80991841-81000133 on Build GRCh38 |
Assay Gene Location: | Within Intron 4 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| CHMP6 | NM_024591.4 | NP_078867.2 | ||
| XM_005257668.1 | XP_005257725.1 | |||
| AK021811.1 | BAB13901.1 | |||
| AK223187.1 | BAD96907.1 | |||
| AK292105.1 | ||||
| AY329087.1 | AAQ91196.1 | |||
| BC010108.2 | AAH10108.1 | |||
| BP196406.1 | ||||
| CR457284.1 | CAG33565.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv952386 | Chr.17:80872501 - 81005700 on Build GRCh38 | Deletion |
 RPTOR
LOC100129503
LOC400627
LOC105371921
LOC107985022
CHMP6
|
| esv26223 | Chr.17:80659041 - 81736487 on Build GRCh38 | Gain+Loss |
TEPSIN
SLC38A10
LOC105371921
MIR3065
LOC107985021
MIR3186
LOC107985022
TMEM105
MIR6786
AATK-AS1
CEP131
RPTOR
ARL16
MIR338
LOC100129503
LOC400627
ACTG1
FSCN2
LOC101928855
CHMP6
SLC25A10
MIR4740
FAAP100
MIR657
NPLOC4
LOC105371925
TSPAN10
BAIAP2-AS1
C17orf89
MRPL12
CCDC137
OXLD1
PDE6G
BAHCC1
MIR1250
LOC100130370
LINC00482
BAIAP2
AATK
HGS
|
| nsv470618 | Chr.17:80952150 - 80997483 on Build GRCh38 | Gain |
RPTOR
LOC400627
LOC107985022
CHMP6
|
| esv3641388 | Chr.17:80978629 - 81012536 on Build GRCh38 | Gain |
LOC100129503
CHMP6
|
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Additional Information:
For this assay, SNP(s) [rs77146109] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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