Assay Details
Target Gene Details
Entrez Gene ID: | 146712 |
Gene Name: | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 |
Gene Aliases: |
3-Gn-T8, B3GNT8, BGnT-8, beta-1, beta3Gn-T8, beta3GnTL1 |
Location: |
Chr.17:82942149-83051845 on Build GRCh38 |
Assay Gene Location: | Within Intron 18 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
B3GNTL1 | NM_001009905.2 | NP_001009905.1 | ||
NM_001320742.1 | NP_001307671.1 | |||
NM_001320743.1 | NP_001307672.1 | |||
NR_135465.1 | ||||
NR_135466.1 | ||||
XM_006722272.3 | XP_006722335.1 | |||
XM_011523532.2 | XP_011521834.1 | |||
XM_011523535.1 | XP_011521837.1 | |||
XM_017024205.1 | XP_016879694.1 | |||
XM_017024206.1 | XP_016879695.1 | |||
AK054757.1 | ||||
AK126018.1 | 1 | 397 | ||
AY304503.1 | AAQ74775.1 | |||
AY634364.1 | AAT47555.1 | |||
BC019623.1 | AAH19623.1 | |||
BC110528.1 | AAI10529.1 | |||
BC110529.1 | AAI10530.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1067553 | Chr.17:82530808 - 83091923 on Build GRCh38 | Loss | FN3KRP WDR45B LOC101929552 TBCD MIR4525 LOC105376791 FOXK2 RAB40B LOC105371944 FN3K METRNL B3GNTL1 ZNF750 |
dgv3296n100 | Chr.17:82851564 - 83091923 on Build GRCh38 | Gain | LOC105371944 TBCD METRNL B3GNTL1 |
nsv428351 | Chr.17:81152631 - 83064073 on Build GRCh38 | Gain | C17orf62 FSCN2 SECTM1 FAAP100 CEP131 PYCR1 MIR4740 MIR4525 STRA13 ASPSCR1 LRRC45 RAB40B HGS DUS1L FASN ARHGDIA TEPSIN LOC105371925 FN3KRP NPLOC4 TBCD LOC105376790 P4HB LOC105376791 FOXK2 NOTUM MCRIP1 SIRT7 TMEM105 PCYT2 MIR6787 ACTG1 PPP1R27 ALYREF HEXDC MIR3186 SLC16A3 MAFG-AS1 WDR45B ANAPC11 LOC100130370 CD7 MAFG CCDC57 SLC38A10 OGFOD3 MRPL12 ARL16 CSNK1D RAC3 SNORD134 B3GNTL1 AATK-AS1 MYADML2 DCXR UTS2R NARF LOC101929511 LOC101929552 TSPAN10 RFNG OXLD1 C17orf89 LOC105371944 BAHCC1 MIR6786 FN3K GPS1 LINC00482 NPB GCGR SLC25A10 PDE6G TEX19 ZNF750 CCDC137 AATK |
nsv576217 | Chr.17:82937869 - 82960820 on Build GRCh38 | Loss | LOC105371944 TBCD B3GNTL1 |
nsv529032 | Chr.17:82946968 - 82963153 on Build GRCh38 | Loss | B3GNTL1 |
dgv3297n100 | Chr.17:82879855 - 83048753 on Build GRCh38 | Gain | LOC105371944 TBCD B3GNTL1 |
esv3893052 | Chr.17:82895301 - 83102003 on Build GRCh38 | Gain | LOC105371944 TBCD METRNL B3GNTL1 |
nsv1057153 | Chr.17:82876571 - 83091923 on Build GRCh38 | Loss | LOC105371944 TBCD METRNL B3GNTL1 |
nsv1063195 | Chr.17:82947423 - 82998143 on Build GRCh38 | Gain | B3GNTL1 |
esv21913 | Chr.17:81828123 - 83103548 on Build GRCh38 | Gain+Loss | C17orf62 SECTM1 PYCR1 MIR4525 STRA13 ASPSCR1 LRRC45 RAB40B DUS1L METRNL FASN ARHGDIA FN3KRP TBCD LOC105376790 P4HB LOC105376791 FOXK2 NOTUM MCRIP1 SIRT7 PCYT2 MIR6787 PPP1R27 ALYREF HEXDC SLC16A3 MAFG-AS1 WDR45B ANAPC11 CD7 MAFG CCDC57 OGFOD3 CSNK1D RAC3 SNORD134 B3GNTL1 MYADML2 DCXR UTS2R NARF LOC101929511 LOC101929552 RFNG LOC105371944 FN3K GPS1 NPB TEX19 ZNF750 |
More Information
Additional Information:
For this assay, SNP(s) [rs78455517] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |