Assay Details
Target Gene Details
Entrez Gene ID: | 57099 |
Gene Name: | apoptosis and caspase activation inhibitor |
Gene Aliases: |
PDCD12 |
Location: |
Chr.15:33858602-34074877 on Build GRCh38 |
Assay Gene Location: | Within Intron 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
AVEN | NM_020371.2 | NP_065104.1 | ||
XM_011521818.2 | XP_011520120.1 | |||
XM_011521819.2 | XP_011520121.1 | |||
XM_011521820.1 | XP_011520122.1 | |||
AF283508.1 | AAF91470.1 | |||
BC010488.1 | AAH10488.1 | |||
BC063533.1 | AAH63533.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv471235 | Chr.15:33743328 - 34129750 on Build GRCh38 | Gain | PGBD4 CHRM5 EMC7 AVEN RYR3 |
esv3636092 | Chr.15:33878005 - 33890938 on Build GRCh38 | Gain | AVEN |
nsv1052620 | Chr.15:32612402 - 34538731 on Build GRCh38 | Gain | SLC12A6 MIR1233-2 LOC101928042 GOLGA8A FMN1 GOLGA8B NUTM1 ARHGAP11A CHRM5 EMC7 LPCAT4 MIR1233-1 PGBD4 EMC4 GREM1 SCG5 LOC105370757 TMCO5B LOC100131315 KATNBL1 NOP10 AVEN LOC101928134 RYR3 |
esv33337 | Chr.15:31689863 - 34575097 on Build GRCh38 | Gain+Loss | LOC100996255 LOC101060588 NUTM1 EMC7 CHRNA7 GOLGA8N LOC105370940 PGBD4 ULK4P1 EMC4 GREM1 GOLGA8K TMCO5B WHAMMP1 KATNBL1 NOP10 LOC101928134 RYR3 SLC12A6 MIR1233-2 LOC101928042 GOLGA8A FMN1 GOLGA8B GOLGA8O ARHGAP11A CHRM5 LOC100653133 LPCAT4 MIR1233-1 SCG5 LOC105370757 LOC100131315 AVEN |
nsv568921 | Chr.15:33754434 - 33955421 on Build GRCh38 | Gain | AVEN RYR3 |
esv3569431 | Chr.15:33564570 - 35080307 on Build GRCh38 | Gain | SLC12A6 MIR1233-2 GOLGA8A GOLGA8B GJD2 NUTM1 CHRM5 ZNF770 EMC7 LPCAT4 MIR1233-1 PGBD4 EMC4 AQR LOC101928174 KATNBL1 NOP10 AVEN RYR3 ACTC1 |
nsv1044844 | Chr.15:33773323 - 34004628 on Build GRCh38 | Loss | CHRM5 AVEN RYR3 |
nsv568920 | Chr.15:33742220 - 34134417 on Build GRCh38 | Gain | PGBD4 CHRM5 EMC7 AVEN RYR3 |
dgv4456n54 | Chr.15:32604149 - 34557061 on Build GRCh38 | Gain | NUTM1 EMC7 GOLGA8N PGBD4 EMC4 GREM1 TMCO5B KATNBL1 NOP10 LOC101928134 RYR3 SLC12A6 MIR1233-2 LOC101928042 GOLGA8A FMN1 GOLGA8B ARHGAP11A CHRM5 LPCAT4 MIR1233-1 SCG5 LOC105370757 LOC100131315 AVEN |
More Information
Additional Information:
For this assay, SNP(s) [rs116322214,rs140776501] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |