Assay Details
Target Gene Details
Entrez Gene ID: | 10417 |
Gene Name: | spondin 2 |
Gene Aliases: |
DIL-1, DIL1, M-SPONDIN, MINDIN |
Location: |
Chr.4:1166932-1208962 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SPON2 | NM_001199021.1 | NP_001185950.1 | ||
DA087369.1 | ||||
DA201089.1 | ||||
DB249869.1 | ||||
DB254983.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv822425 | Chr.4:546316 - 1420011 on Build GRCh38 | Loss | NKX1-1 MYL5 SPON2 MAEA GAK CRIPAK CTBP1-AS LOC101928548 LOC107986211 TMEM175 MFSD7 LOC100129917 IDUA LOC105374344 DGKQ TMED11P SLC26A1 PDE6B FGFRL1 PCGF3 CTBP1-AS2 RNF212 CTBP1 ATP5I LOC100130872 UVSSA CPLX1 LOC101928521 |
nsv593278 | Chr.4:1165892 - 1421910 on Build GRCh38 | Loss | CTBP1-AS NKX1-1 CTBP1 LOC100130872 LOC101928548 SPON2 UVSSA MAEA CTBP1-AS2 CRIPAK |
nsv950331 | Chr.4:1164113 - 1239212 on Build GRCh38 | Deletion | CTBP1-AS CTBP1 LOC100130872 LOC101928548 SPON2 |
nsv519106 | Chr.4:1165203 - 1181073 on Build GRCh38 | Loss | SPON2 |
nsv1012892 | Chr.4:1093083 - 1182842 on Build GRCh38 | Loss | RNF212 LOC105374344 SPON2 TMED11P |
nsv829835 | Chr.4:1103798 - 1310451 on Build GRCh38 | Gain | RNF212 CTBP1-AS CTBP1 LOC100130872 LOC101928548 LOC105374344 SPON2 TMED11P MAEA CTBP1-AS2 |
More Information
Additional Information:
For this assay, SNP(s) [rs78500739] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |