Assay Details
Target Gene Details
Entrez Gene ID: | 10752 |
Gene Name: | cell adhesion molecule L1 like |
Gene Aliases: |
CALL, L1CAM2 |
Location: |
Chr.3:196588-409417 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1010970 | Chr.3:188327 - 1623352 on Build GRCh38 | Gain | CNTN6 CHL1 LINC01266 LOC101927174 CHL1-AS1 |
esv2759122 | Chr.3:29482 - 756820 on Build GRCh38 | Gain+Loss | CHL1 LINC01266 LOC101927174 CHL1-AS1 |
esv3594872 | Chr.3:36658 - 319672 on Build GRCh38 | Loss | CHL1 LOC101927174 |
nsv526340 | Chr.3:21733 - 2305176 on Build GRCh38 | Loss | CNTN6 CHL1 LINC01266 LOC101927174 CNTN4-AS2 LOC102723448 CHL1-AS1 CNTN4 |
esv2667629 | Chr.3:39576 - 1039187 on Build GRCh38 | Deletion | CNTN6 CHL1 LINC01266 LOC101927174 CHL1-AS1 |
nsv508206 | Chr.3:183024 - 203282 on Build GRCh38 | Deletion | CHL1 LOC101927174 |
nsv428412 | Chr.3:29467 - 326726 on Build GRCh38 | Gain | CHL1 LOC101927174 |
nsv1001867 | Chr.3:193194 - 252963 on Build GRCh38 | Gain | CHL1 LOC101927174 |
nsv589247 | Chr.3:181998 - 209030 on Build GRCh38 | Loss | CHL1 LOC101927174 |
nsv589283 | Chr.3:192626 - 321571 on Build GRCh38 | Gain | CHL1 LOC101927174 |
dgv4608n100 | Chr.3:18655 - 438490 on Build GRCh38 | Gain | CHL1 LOC101927174 LOC102723448 CHL1-AS1 |
esv3893585 | Chr.3:44574 - 267680 on Build GRCh38 | Gain | CHL1 LOC101927174 |
dgv4613n100 | Chr.3:52474 - 1799230 on Build GRCh38 | Loss | CNTN6 CHL1 LINC01266 LOC101927174 CHL1-AS1 |
dgv266n21 | Chr.3:199889 - 203266 on Build GRCh38 | Loss | CHL1 |
esv2751984 | Chr.3:168062 - 253971 on Build GRCh38 | Gain | CHL1 LOC101927174 |
nsv3670 | Chr.3:180797 - 207095 on Build GRCh38 | Deletion | CHL1 LOC101927174 |
nsv460304 | Chr.3:143598 - 212269 on Build GRCh38 | Gain | CHL1 LOC101927174 |
esv3893587 | Chr.3:199189 - 204691 on Build GRCh38 | Loss | CHL1 |
nsv589242 | Chr.3:47730 - 388999 on Build GRCh38 | Gain | CHL1 LOC101927174 CHL1-AS1 |
More Information
Additional Information:
For this assay, SNP(s) [rs73814172] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |