Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
XM_017026666.1 | XP_016882155.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | TARM1 OSCAR PRPF31 TFPT NDUFA3 VSTM1 |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | TARM1 CACNG6 VSTM1 CACNG8 MIR935 |
nsv2542 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion | TARM1 OSCAR VSTM1 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | CACNG6 VSTM1 CACNG8 MIR935 CACNG7 |
esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain | VSTM1 |
dgv663e199 | Chr.19:54051591 - 54059132 on Build GRCh38 | Deletion | VSTM1 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | VN1R4 MIR523 OSCAR LILRB2 MIR518A2 LOC284379 LILRB5 MIR520B MIR518B CACNG8 TMC4 DPRX MIR4752 ZNF665 TPM3P9 MIR519A1 MIR516A2 MIR519D MIR518C MIR519C MIR517C MIR372 MIR524 MIR518A1 MIR519A2 MIR526B TARM1 PRPF31 MIR519E CNOT3 NDUFA3 MIR512-2 MIR527 MIR520E ZNF677 LILRB3 MIR521-1 ZNF813 BIRC8 MIR520A LILRA5 MIR520D MIR520C MIR498 VSTM1 MIR371B MIR935 LILRA6 TSEN34 MIR371A CACNG7 MIR515-2 ZNF765 MIR520F TFPT MIR519B ZNF525 MIR526A1 MIR515-1 VN1R2 FAM90A27P MIR518F MIR1323 MIR517B LOC105372457 MIR521-2 MIR518D ZNF845 MIR520G CACNG6 MBOAT7 MIR516A1 MIR520H MYADM MIR373 MIR526A2 MIR512-1 LENG1 ZNF331 NLRP12 ZNF818P MIR1283-1 MIR525 RPS9 MIR516B1 ZNF761 MIR522 MIR516B2 PRKCG MIR517A MIR1283-2 MIR518E |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | TARM1 OSCAR PRPF31 TFPT NDUFA3 CACNG6 VSTM1 CACNG8 MIR935 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |