Hs04459074_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89889118 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2			NP_055787.1
	XM_005256297.2			XP_005256354.1
	XM_005256298.2			XP_005256355.1
	XM_005256299.2			XP_005256356.1
	XM_011522956.2			XP_011521258.1
	XM_011522957.2			XP_011521259.1
	XM_011522958.2			XP_011521260.1
	XM_011522959.2			XP_011521261.1
	XM_011522960.2			XP_011521262.1
	XM_011522961.2			XP_011521263.1
	XM_017023047.1			XP_016878536.1
	XM_017023048.1			XP_016878537.1
	XM_017023049.1			XP_016878538.1
	XM_017023050.1			XP_016878539.1
	XM_017023051.1			XP_016878540.1
	XM_017023052.1			XP_016878541.1
	XM_017023053.1			XP_016878542.1
	XM_017023054.1			XP_016878543.1
	XM_017023055.1			XP_016878544.1
	XM_017023056.1			XP_016878545.1
	XM_017023057.1			XP_016878546.1
	XM_017023058.1			XP_016878547.1
	AB028972.1			BAA83001.1
	AF130092.1			AAG35518.1
	AF322111.1			AAG50276.1
	AK024679.1			BAB14959.1
	BC000959.1			AAH00959.1
	BC009349.2			AAH09349.1
	BC011884.2			AAH11884.1
	DQ321703.1			ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv573744	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	TCF25 LOC105371419 ZNF276 LOC107984817 SPIRE2 FANCA
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	TCF25 LOC105371419 LOC107984817 SPIRE2 FANCA
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	TCF25 DBNDD1 VPS9D1 GAS8 CHMP1A AFG3L1P FANCA CDK10 SPATA33 SPATA2L TUBB3 LOC105371419 CENPBD1 ZNF276 LOC107984817 VPS9D1-AS1 SPIRE2 DPEP1 DEF8 MC1R GAS8-AS1
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	TCF25 DBNDD1 TUBB3 CENPBD1 GAS8 SPIRE2 DEF8 AFG3L1P MC1R GAS8-AS1
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	TUBB8P7 DBNDD1 LOC100287036 VPS9D1 ZNF778 PRDM7 LOC105371414 SPG7 AFG3L1P SPATA33 SPATA2L URAHP FAM157C LOC107984817 SPIRE2 DPEP1 DEF8 MC1R TCF25 ANKRD11 GAS8 CHMP1A FANCA CDK10 LOC101927817 TUBB3 CPNE7 LOC105371419 CENPBD1 ZNF276 VPS9D1-AS1 SNORD68 RPL13 GAS8-AS1
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	TCF25 DBNDD1 TUBB3 LOC105371419 CENPBD1 GAS8 SPIRE2 DEF8 AFG3L1P MC1R
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	TUBB8P7 DBNDD1 CTU2 CYBA SNAI3-AS1 SPG7 AFG3L1P PABPN1L SNAI3 SPATA33 SPATA2L CDT1 URAHP FAM157C PIEZO1 LINC00304 DPEP1 MC1R LOC107987238 TCF25 APRT ANKRD11 CDH15 LOC101927817 LOC339059 SLC22A31 CPNE7 MIR4722 RNF166 MVD SNORD68 GALNS CBFA2T3 GAS8-AS1 TRAPPC2L IL17C LOC100287036 VPS9D1 ZNF778 PRDM7 LOC105371414 ACSF3 LOC105371409 LOC107984817 SPIRE2 DEF8 GAS8 LOC100289580 CHMP1A FANCA CDK10 LOC101927793 LOC400558 TUBB3 LOC105371419 CENPBD1 ZNF276 VPS9D1-AS1 LOC100129697 RPL13

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding