Assay Details
Target Gene Details
Entrez Gene ID: | 55326 |
Gene Name: | 1-acylglycerol-3-phosphate O-acyltransferase 5 |
Gene Aliases: |
1AGPAT5, LPAATE |
Location: |
Chr.8:6708357-6761503 on Build GRCh38 |
Assay Gene Location: | Within Intron 5 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
AGPAT5 | NM_018361.3 | NP_060831.2 | ||
XM_011534751.2 | XP_011533053.1 | |||
AF375789.1 | AAK54809.1 | |||
AK002072.1 | BAA92069.1 | |||
AK310545.1 | ||||
AL136587.1 | CAB66522.1 | |||
BC023550.2 | AAH23550.1 | |||
BC068519.1 | AAH68519.1 | |||
BC080537.1 | AAH80537.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1021684 | Chr.8:6492570 - 6951933 on Build GRCh38 | Loss | DEFA4 MIR8055 DEFA8P MIR4659B MIR4659A GS1-24F4.2 DEFB1 ANGPT2 MCPH1 MCPH1-AS1 DEFA6 XKR5 AGPAT5 |
nsv610004 | Chr.8:6544845 - 6915391 on Build GRCh38 | Gain | MIR4659A GS1-24F4.2 DEFB1 MIR8055 ANGPT2 MCPH1 MIR4659B MCPH1-AS1 XKR5 AGPAT5 |
nsv1025976 | Chr.8:6615427 - 6829450 on Build GRCh38 | Loss | MIR4659A MIR8055 MCPH1 MIR4659B MCPH1-AS1 XKR5 AGPAT5 |
esv2422383 | Chr.8:6504868 - 6924071 on Build GRCh38 | Duplication | MIR4659A GS1-24F4.2 DEFB1 MIR8055 ANGPT2 MCPH1 MIR4659B MCPH1-AS1 XKR5 AGPAT5 |
nsv831220 | Chr.8:6670324 - 6870969 on Build GRCh38 | Gain | MIR4659A GS1-24F4.2 DEFB1 MIR4659B MCPH1-AS1 XKR5 AGPAT5 |
nsv610006 | Chr.8:6710680 - 7063882 on Build GRCh38 | Gain | DEFA4 DEFA11P DEFT1P DEFA8P MIR4659B DEFA7P DEFA10P DEFA3 MIR4659A DEFA5 GS1-24F4.2 DEFB1 DEFA1 DEFT1P2 DEFA9P DEFA6 DEFA1B XKR5 AGPAT5 |
nsv1031577 | Chr.8:6712833 - 8008628 on Build GRCh38 | Gain | DEFA4 DEFB108P1 DEFB105A DEFA8P USP17L1 FAM90A7P DEFA5 OR7E125P DEFB1 ZNF705G DEFA1B DEFB106A SPAG11A XKR5 DEFB4B DEFA11P FAM66E OR7E154P LOC101929400 DEFB4A DEFA10P SPAG11B USP17L4 MIR4659A LINC00965 DEFB103B AGPAT5 DEFT1P PRR23D2 LOC101928095 GS1-24F4.2 DEFT1P2 DEFB105B DEFB107A DEFB104A FAM90A10P DEFA6 FAM66B USP17L3 ZNF705B DEFB106B DEFB103A PRR23D1 LOC107986910 USP17L8 MIR4659B DEFA7P DEFA3 DEFA1 DEFB104B DEFA9P DEFB107B DEFB109P1B |
dgv6876n100 | Chr.8:6687977 - 6812428 on Build GRCh38 | Loss | MIR4659A MIR4659B MCPH1-AS1 XKR5 AGPAT5 |
More Information
Additional Information:
For this assay, SNP(s) [rs79061906] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |