Assay Details
Target Gene Details
Entrez Gene ID: | 80350 |
Gene Name: | lipoprotein(a) like 2, pseudogene |
Gene Aliases: |
APOA2, APOAL, APOARGC, apo(a)rg-C |
Location: |
Chr.6:160466555-160511124 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LPAL2 | NR_028092.1 | |||
NR_028093.1 | ||||
U19517.1 | AAA85692.1 | |||
U19518.1 | AAA85693.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv3611438 | Chr.6:160487993 - 160503876 on Build GRCh38 | Gain | LPAL2 |
nsv5566 | Chr.6:160484923 - 160518346 on Build GRCh38 | Insertion | LPAL2 |
esv35098 | Chr.6:160001557 - 160649838 on Build GRCh38 | Gain | LOC729603 SLC22A1 LPA IGF2R AIRN LPAL2 SLC22A2 SLC22A3 |
nsv818463 | Chr.6:160014537 - 160604515 on Build GRCh38 | Gain | LOC729603 SLC22A1 LPA IGF2R LPAL2 SLC22A2 SLC22A3 |
esv6519 | Chr.6:160456601 - 160535561 on Build GRCh38 | Loss | LPA LPAL2 |
nsv970186 | Chr.6:160497203 - 160511769 on Build GRCh38 | Duplication | LPAL2 |
esv3611436 | Chr.6:160456712 - 160535559 on Build GRCh38 | Gain | LPA LPAL2 |
esv2733055 | Chr.6:160457077 - 160668796 on Build GRCh38 | Deletion | LPA LPAL2 |
nsv1026543 | Chr.6:160306836 - 161585804 on Build GRCh38 | Gain | AGPAT4 LPA AGPAT4-IT1 PLG MAP3K4 LPAL2 PARK2 SLC22A3 LOC105378098 |
esv2759484 | Chr.6:159951212 - 160813633 on Build GRCh38 | Gain+Loss | LOC729603 SLC22A1 LPA PLG IGF2R AIRN LPAL2 SLC22A2 SLC22A3 |
nsv525990 | Chr.6:160482590 - 160549931 on Build GRCh38 | Loss | LPA LPAL2 |
More Information
Additional Information:
For this assay, SNP(s) [rs113715756,rs117733303] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |