Assay Details
Target Gene Details
Entrez Gene ID: | 7161 |
Gene Name: | tumor protein p73 |
Gene Aliases: |
P73 |
Location: |
Chr.1:3652565-3736201 on Build GRCh38 |
Assay Gene Location: | Within Exon 16 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TP73 | NM_001126240.2 | 12 | 4892 | NP_001119712.1 |
NM_001126241.2 | 11 | 4798 | NP_001119713.1 | |
NM_001126242.2 | 11 | 4743 | NP_001119714.1 | |
NM_001204184.1 | 13 | 4821 | NP_001191113.1 | |
NM_001204185.1 | 13 | 4766 | NP_001191114.1 | |
NM_001204186.1 | 11 | 4533 | NP_001191115.1 | |
NM_001204187.1 | 12 | 4672 | NP_001191116.1 | |
NM_001204188.1 | 12 | 4627 | NP_001191117.1 | |
NM_001204189.1 | 9 | 4510 | NP_001191118.1 | |
NM_001204190.1 | 10 | 4649 | NP_001191119.1 | |
NM_001204191.1 | 10 | 4604 | NP_001191120.1 | |
NM_001204192.1 | 12 | 4725 | NP_001191121.1 | |
NM_005427.3 | 14 | 4915 | NP_005418.1 | |
AI094238.1 | 1 | 240 |
Target Gene Details
Entrez Gene ID: | 57212 |
Gene Name: | TP73 antisense RNA 1 |
Gene Aliases: |
KIAA0495, PDAM |
Location: |
Chr.1:3735984-3747373 on Build GRCh38 |
Assay Gene Location: | Overlaps - Exon 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TP73-AS1 | NR_033708.1 | |||
NR_033709.1 | ||||
NR_033710.1 | ||||
NR_033711.1 | ||||
NR_033712.1 | ||||
AB007964.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv460061 | Chr.1:3680453 - 3755227 on Build GRCh38 | Loss | TP73-AS1 CCDC27 TP73 |
nsv470687 | Chr.1:3356499 - 3763210 on Build GRCh38 | Loss | WRAP73 TP73-AS1 MEGF6 PRDM16 CCDC27 MIR551A ARHGEF16 TP73 TPRG1L |
esv994567 | Chr.1:3735559 - 3738806 on Build GRCh38 | Deletion | TP73-AS1 TP73 |
nsv1001715 | Chr.1:3627619 - 3769754 on Build GRCh38 | Loss | WRAP73 TP73-AS1 CCDC27 TP73 TPRG1L |
esv3585042 | Chr.1:3585575 - 4260083 on Build GRCh38 | Gain | C1orf174 TP73-AS1 MEGF6 SMIM1 LRRC47 DFFB LINC01346 WRAP73 LINC01134 CEP104 CCDC27 TP73 TPRG1L |
nsv1012423 | Chr.1:3477686 - 4747449 on Build GRCh38 | Gain | C1orf174 TP73-AS1 MEGF6 AJAP1 MIR551A SMIM1 LRRC47 DFFB LINC01346 WRAP73 LINC01134 LOC284661 CEP104 CCDC27 ARHGEF16 TP73 TPRG1L |
nsv951959 | Chr.1:3051037 - 3812036 on Build GRCh38 | Deletion | TP73-AS1 MEGF6 PRDM16 MIR551A SMIM1 LRRC47 WRAP73 MIR4251 LINC00982 CCDC27 ARHGEF16 TP73 TPRG1L LOC105378604 |
nsv830314 | Chr.1:3660776 - 3804275 on Build GRCh38 | Gain+Loss | TP73-AS1 CCDC27 SMIM1 LRRC47 TP73 |
dgv13n100 | Chr.1:3730448 - 3791316 on Build GRCh38 | Gain | TP73-AS1 CCDC27 SMIM1 LRRC47 TP73 |
esv2758916 | Chr.1:3668477 - 3738972 on Build GRCh38 | Gain | TP73-AS1 TP73 |
More Information
Additional Information:
For this assay, SNP(s) [rs80098330] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Non-exonic DGV Variation |