Assay Details
Target Gene Details
Entrez Gene ID: | 10732 |
Gene Name: | transcription factor like 5 |
Gene Aliases: |
CHA, E2BP-1, Figlb, bHLHe82 |
Location: |
Chr.20:62841014-62861763 on Build GRCh38 |
Assay Gene Location: | Within Intron 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TCFL5 | NM_006602.3 | NP_006593.2 | ||
XM_005260185.3 | XP_005260242.1 | |||
XM_011528497.2 | XP_011526799.1 | |||
XM_011528499.1 | XP_011526801.1 | |||
AB012124.1 | BAA36557.1 | |||
AF070992.1 | AAD53986.1 | |||
AJ271337.1 | CAC24700.1 | |||
BC046933.1 | AAH46933.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv834027 | Chr.20:62707655 - 62874914 on Build GRCh38 | Loss | TCFL5 DPH3P1 OGFR NTSR1 LINC00659 MRGBP COL9A3 LOC107985428 OGFR-AS1 LOC107987285 |
nsv828794 | Chr.20:62832958 - 62880035 on Build GRCh38 | Loss | TCFL5 DPH3P1 COL9A3 DIDO1 |
nsv9825 | Chr.20:62775470 - 63601330 on Build GRCh38 | Gain | PPDPF GMEB2 DPH3P1 SLC17A9 COL20A1 LOC63930 ARFGAP1 MRGBP OGFR-AS1 DIDO1 MIR4326 NKAIN4 LOC107985425 LOC100130587 LINC00659 BIRC7 HAR1A LOC102723788 LOC107985428 LOC100130152 FNDC11 MIR3196 MIR124-3 KCNQ2 CHRNA4 HELZ2 LINC01056 HAR1B FLJ16779 LINC00029 PTK6 COL9A3 BHLHE23 TCFL5 OGFR YTHDF1 EEF1A2 GID8 SRMS |
nsv428380 | Chr.20:62632018 - 62935383 on Build GRCh38 | Loss | SLCO4A1 DPH3P1 MRGBP COL9A3 OGFR-AS1 DIDO1 TCFL5 OGFR NTSR1 LINC00659 SLCO4A1-AS1 LOC107985428 LOC107987285 |
More Information
Additional Information:
For this assay, SNP(s) [rs66634465] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |