Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
XM_017026666.1 | XP_016882155.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | NDUFA3 OSCAR VSTM1 TFPT PRPF31 TARM1 |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | CACNG8 CACNG6 VSTM1 MIR935 TARM1 |
nsv2542 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion | OSCAR VSTM1 TARM1 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | CACNG8 CACNG6 VSTM1 CACNG7 MIR935 |
esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain | VSTM1 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | VN1R4 MIR512-2 MIR518D OSCAR VSTM1 MIR520D CACNG7 MIR935 LILRA6 MIR518C MIR519A2 MIR372 LILRB5 MIR516A2 MIR518B ZNF845 NLRP12 TPM3P9 DPRX MIR518A1 MIR515-2 VN1R2 BIRC8 NDUFA3 MIR520A MIR520C MIR371A MIR518A2 CACNG8 TSEN34 MIR516B1 PRKCG MIR520G MIR519C ZNF525 MIR518E MIR520E RPS9 ZNF813 MIR526A2 MIR512-1 PRPF31 MIR520B LILRA5 MIR519A1 MBOAT7 MIR526A1 MIR520H MIR371B ZNF331 MIR1323 MIR520F MIR517B MIR1283-1 MIR521-2 LOC105372457 LOC284379 TMC4 MIR525 ZNF665 MIR516B2 ZNF761 LENG1 MIR519B TARM1 LILRB2 MIR524 FAM90A27P MYADM MIR518F ZNF765 MIR516A1 TFPT MIR523 MIR521-1 ZNF818P LILRB3 MIR1283-2 MIR522 MIR498 MIR373 MIR4752 MIR527 MIR517C MIR519D MIR526B ZNF677 CACNG6 CNOT3 MIR519E MIR515-1 MIR517A |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | CACNG8 NDUFA3 CACNG6 OSCAR VSTM1 TFPT MIR935 PRPF31 TARM1 |
More Information
Additional Information:
For this assay, SNP(s) [rs117366834] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |