Assay Details
Target Gene Details
Entrez Gene ID: | 53635 |
Gene Name: | prostate tumor overexpressed 1 |
Gene Aliases: |
ACID2, PTOV-1 |
Location: |
Chr.19:49850726-49860744 on Build GRCh38 |
Assay Gene Location: | Within Intron 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PTOV1 | NM_001305105.1 | NP_001292034.1 | ||
NM_001305108.1 | NP_001292037.1 | |||
NM_017432.4 | NP_059128.2 | |||
NR_130963.1 | ||||
XM_005258998.4 | XP_005259055.1 | |||
XM_006723244.3 | XP_006723307.1 | |||
XM_011527033.1 | XP_011525335.1 | |||
XM_011527034.2 | XP_011525336.1 | |||
XM_011527035.1 | XP_011525337.1 | |||
XM_017026879.1 | XP_016882368.1 | |||
XM_017026880.1 | XP_016882369.1 | |||
AJ617480.1 | CAE84582.1 | |||
AK057817.1 | ||||
AY358168.1 | AAQ88535.1 | |||
U79287.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | CA11 SYNGR4 MIR6798 SNAR-C4 NUCB1-AS1 LMTK3 SNAR-A14 SNAR-C2 LOC105372430 MIR4324 CPT1C PTH2 SLC6A16 MIR4751 GFY SNAR-A8 ZNF114 LOC101928295 RRAS PTOV1-AS1 SIGLEC11 PNKP SNAR-G2 PTOV1 FLJ26850 SNORD32A SULT2B1 EMP3 CGB5 SNAR-B2 SNAR-A10 PRMT1 MED25 ATF5 SNAR-A1 CGB7 LIN7B CGB2 RPL13A SNAR-A3 TEAD2 SNAR-C1 SNORD33 MIR6799 ELSPBP1 SNAR-B1 SNAR-A9 SNAR-C3 SNAR-A6 PRRG2 MIR4749 MIR150 LOC100287477 SNORD35A TBC1D17 SEC1P ADM5 SNAR-A5 C19orf73 TRPM4 RPL18 RCN3 CCDC155 CABP5 SNAR-A7 CGB1 FTL DBP RUVBL2 SNAR-D SCAF1 KCNJ14 FGF21 PLA2G4C-AS1 FUT2 GRIN2D SNAR-A11 IRF3 PLA2G4C SIGLEC16 LOC101059948 GRWD1 LIG1 HSD17B14 TSKS BSPH1 KDELR1 AKT1S1 C19orf68 NUP62 SLC17A7 BCL2L12 ZNF473 SNORD35B FAM83E SNAR-A2 MIR5088 BCAT2 SPACA4 SNAR-A12 RPS11 ALDH16A1 SPHK2 IL4I1 TMEM143 CGB3 CARD8-AS1 CARD8 FCGRT MIR6800 CYTH2 PLEKHA4 NOSIP NTN5 FUZ FUT1 MAMSTR CCDC114 DHDH LHB SNORD34 SNAR-G1 KCNA7 PIH1D1 SNAR-A13 PPP1R15A VRK3 NTF4 RASIP1 NUCB1 CGB8 AP2A1 LOC105447645 MIR4750 FLT3LG SNAR-A4 SNAR-C5 DKKL1 IZUMO1 GYS1 BAX PTOV1-AS2 PPFIA3 SNRNP70 HRC TULP2 CD37 PRR12 |
nsv526372 | Chr.19:49853907 - 49877601 on Build GRCh38 | Loss | PTOV1 TBC1D17 PTOV1-AS2 PNKP AKT1S1 MIR4749 |
nsv470150 | Chr.19:49618821 - 49856789 on Build GRCh38 | Gain | MIR6800 RRAS FUZ IRF3 AP2A1 ADM5 BCL2L12 PTOV1-AS1 MIR5088 PTOV1 CPT1C MIR6799 PRMT1 MED25 TSKS PTOV1-AS2 SCAF1 MIR4749 PRR12 |
dgv53n68 | Chr.19:49724393 - 49943224 on Build GRCh38 | Loss | MIR6800 MIR4751 FUZ AP2A1 TBC1D17 MIR4750 PTOV1-AS1 PNKP PTOV1 MIR6799 MED25 TSKS IL4I1 PTOV1-AS2 ATF5 AKT1S1 NUP62 MIR4749 |
nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion | MIR6800 NOSIP FUZ IRF3 CPT1C MIR6799 TSKS AKT1S1 NUP62 PRRG2 MIR4749 MIR4751 RRAS AP2A1 TBC1D17 ADM5 BCL2L12 MIR4750 PTOV1-AS1 PNKP MIR5088 PTOV1 PRMT1 MED25 IL4I1 PTOV1-AS2 ATF5 SCAF1 PRR12 |
dgv54n68 | Chr.19:49848512 - 50008788 on Build GRCh38 | Loss | VRK3 MIR4751 TBC1D17 SIGLEC16 MIR4750 PTOV1-AS1 SIGLEC11 PNKP PTOV1 IL4I1 PTOV1-AS2 ATF5 AKT1S1 NUP62 MIR4749 |
More Information
Additional Information:
For this assay, SNP(s) [rs74546599] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |