Assay Details
Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SCAF1 | NM_021228.2 | 7 | 1489 | NP_067051.2 |
XM_005259122.4 | 7 | 1772 | XP_005259179.1 | |
XM_011527194.2 | 7 | 1414 | XP_011525496.1 | |
XM_017027083.1 | 4 | 1216 | XP_016882572.1 | |
AK024444.1 | 7 | 1489 | ||
BC011662.2 | AAH11662.2 | |||
BC053992.1 | 6 | 1376 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss | SCAF1 PRR12 NOSIP PRMT1 CPT1C PRRG2 IRF3 MIR5088 ADM5 RRAS BCL2L12 |
nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss | SCAF1 PRR12 NOSIP PRMT1 CPT1C PRRG2 IRF3 MIR5088 ADM5 RRAS BCL2L12 |
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | TSKS SNAR-A3 SNORD33 FCGRT LHB SNAR-A1 RPL18 TMEM143 SNAR-D PRRG2 MED25 CABP5 RPS11 FUT2 BCAT2 GRWD1 SNAR-A11 SIGLEC11 MIR150 LOC105372430 CA11 LOC100287477 SNAR-A12 CCDC155 GYS1 SNORD35B SNAR-C4 SLC17A7 PLA2G4C FUZ PTOV1-AS2 CPT1C TRPM4 HSD17B14 CGB2 ALDH16A1 SNAR-C2 SNORD32A NUP62 LOC105447645 C19orf68 SNAR-B1 RRAS FTL CGB5 BCL2L12 LIN7B MIR6799 BAX CARD8 AKT1S1 SIGLEC16 SNAR-A10 SNAR-A9 MAMSTR SNAR-A5 LOC101928295 DHDH RPL13A RUVBL2 CGB1 IL4I1 SNAR-A7 SNAR-G1 SNAR-G2 C19orf73 PNKP SNAR-A14 EMP3 ADM5 SNAR-B2 SPHK2 FUT1 AP2A1 PPFIA3 TULP2 SCAF1 TEAD2 ATF5 SNAR-C3 PIH1D1 DKKL1 CYTH2 MIR4751 GFY CGB7 PLA2G4C-AS1 RASIP1 CARD8-AS1 SNAR-A13 MIR4324 FAM83E MIR6800 PRR12 SLC6A16 PLEKHA4 NTF4 RCN3 SNRNP70 DBP HRC TBC1D17 PTOV1-AS1 LMTK3 SNAR-A8 CGB8 ELSPBP1 KCNA7 LOC101059948 ZNF473 CCDC114 SNAR-A4 FLT3LG SPACA4 ZNF114 FGF21 MIR4749 LIG1 KCNJ14 MIR4750 SNAR-C5 SNAR-A2 GRIN2D IZUMO1 IRF3 MIR6798 MIR5088 FLJ26850 NUCB1 PTOV1 NOSIP SYNGR4 NUCB1-AS1 SEC1P SULT2B1 CD37 SNORD35A PPP1R15A SNAR-C1 KDELR1 BSPH1 PRMT1 SNORD34 SNAR-A6 VRK3 CGB3 PTH2 NTN5 |
nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain | SCAF1 PRR12 PRMT1 CPT1C IRF3 MIR5088 ADM5 RRAS BCL2L12 |
nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss | SCAF1 IRF3 |
nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion | SCAF1 MIR4749 NUP62 ATF5 MIR4750 TSKS IRF3 MIR5088 RRAS BCL2L12 PTOV1 NOSIP MIR6799 MIR4751 PRRG2 MED25 AKT1S1 MIR6800 PRR12 FUZ TBC1D17 IL4I1 PTOV1-AS1 PNKP PTOV1-AS2 PRMT1 CPT1C ADM5 AP2A1 |
nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain | SCAF1 PRR12 NOSIP PRMT1 CPT1C PRRG2 IRF3 MIR5088 ADM5 RRAS BCL2L12 |
nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion | SCAF1 SNORD32A TSKS IRF3 MIR5088 RRAS SNORD33 FCGRT BCL2L12 NOSIP MIR6799 PRRG2 MED25 RPS11 MIR150 SNORD35A MIR6800 PRR12 SNORD35B RPL13A RCN3 FUZ PTOV1-AS1 PRMT1 CPT1C SNORD34 ADM5 AP2A1 |
nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss | SCAF1 PRR12 NOSIP PRMT1 PRRG2 IRF3 RRAS BCL2L12 |
nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss | SCAF1 IRF3 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |