Assay Details
Target Gene Details
Entrez Gene ID: | 1973 |
Gene Name: | eukaryotic translation initiation factor 4A1 |
Gene Aliases: |
DDX2A, EIF-4A, EIF4A, eIF-4A-I, eIF4A-I |
Location: |
Chr.17:7572706-7579006 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
EIF4A1 | NM_001204510.1 | NP_001191439.1 | ||
NM_001416.3 | NP_001407.1 | |||
AK130082.1 | ||||
AK289453.1 | ||||
AK291971.1 | ||||
AK296664.1 | ||||
AK297916.1 | ||||
AK303222.1 | ||||
AK303599.1 | ||||
AK309274.1 | ||||
AK312630.1 | ||||
BC009585.1 | AAH09585.1 | |||
BC073752.1 | AAH73752.1 | |||
BG284868.1 | ||||
BT019880.1 | AAV38683.1 | |||
BT019881.1 | AAV38684.1 | |||
D13748.1 | BAA02897.1 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Within Intron 12 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | MIR324 SOX15 ELP5 TNFSF13 EIF5A TMEM95 TNK1 C17orf74 SLC16A13 SPEM1 CHRNB1 ACADVL LOC100996842 GABARAP SLC2A4 SNORD10 SENP3-EIF4A1 CLDN7 RNASEK-C17orf49 KCTD11 DVL2 FBXO39 NEURL4 TNFSF12-TNFSF13 ALOX12 MIR497 ASGR1 MPDU1 NLGN2 SNORA67 CLEC10A MIR195 YBX2 BCL6B CD68 MIR497HG GPS2 FGF11 ATP1B2 DLG4 SENP3 EIF4A1 TMEM256-PLSCR3 TMEM102 SLC35G6 CTDNEP1 LOC107983988 SAT2 PHF23 POLR2A SHBG SLC16A11 TNFSF12 PLSCR3 ACAP1 ALOX12-AS1 SNORA48 C17orf49 ZBTB4 RNASEK TEKT1 ASGR2 TMEM256 FXR2 ALOX12P2 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | MIR324 SOX15 ELP5 TNFSF13 EIF5A TMEM95 TNK1 C17orf74 SLC16A13 SPEM1 CHRNB1 ACADVL LOC100996842 GABARAP SLC2A4 SNORD10 SENP3-EIF4A1 CLDN7 RNASEK-C17orf49 KCTD11 DVL2 NEURL4 TNFSF12-TNFSF13 ALOX12 WRAP53 MIR497 ASGR1 MPDU1 NLGN2 SNORA67 CLEC10A MIR195 YBX2 BCL6B CD68 MIR497HG GPS2 FGF11 ATP1B2 DLG4 SENP3 EIF4A1 TMEM256-PLSCR3 TMEM102 SLC35G6 CTDNEP1 LOC107983988 SAT2 PHF23 POLR2A SHBG TP53 SLC16A11 TNFSF12 PLSCR3 ACAP1 ALOX12-AS1 SNORA48 C17orf49 ZBTB4 RNASEK ASGR2 TMEM256 FXR2 |
More Information
Additional Information:
For this assay, SNP(s) [rs114255812] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |