Assay Details
Target Gene Details
Entrez Gene ID: | 53630 |
Gene Name: | beta-carotene oxygenase 1 |
Gene Aliases: |
BCDO, BCDO1, BCMO, BCMO1, BCO |
Location: |
Chr.16:81238642-81291142 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
BCO1 | NM_017429.2 | NP_059125.2 | ||
XM_011523109.1 | XP_011521411.1 | |||
XM_017023286.1 | XP_016878775.1 | |||
XM_017023287.1 | XP_016878776.1 | |||
XM_017023288.1 | XP_016878777.1 | |||
AF294900.1 | AAG15380.1 | |||
AK001592.1 | BAA91776.1 | |||
AK296011.1 | ||||
BC126210.1 | ||||
BC126212.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv3892912 | Chr.16:81154247 - 81267966 on Build GRCh38 | Gain |
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esv2751615 | Chr.16:81059494 - 81273994 on Build GRCh38 | Gain |
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nsv1064529 | Chr.16:81189638 - 81270154 on Build GRCh38 | Loss |
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nsv1058690 | Chr.16:81213509 - 81247008 on Build GRCh38 | Loss |
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esv2761925 | Chr.16:81228911 - 81244433 on Build GRCh38 | Loss |
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dgv3048n100 | Chr.16:81170818 - 81270154 on Build GRCh38 | Gain |
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nsv527288 | Chr.16:81170583 - 81277342 on Build GRCh38 | Gain |
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esv3582386 | Chr.16:81209343 - 81257026 on Build GRCh38 | Loss |
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nsv573354 | Chr.16:81170476 - 81261288 on Build GRCh38 | Gain |
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![](/order/genome-database/details/genotyping/assets/img/arrow_icon_up_black.png)
More Information
Additional Information:
For this assay, SNP(s) [rs74324342,rs74403414] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
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Panther Classification:
Gene Ontology Categories:
![](/order/genome-database/details/genotyping/assets/img/arrow_icon_up_black.png)