Assay Details
Target Gene Details
Entrez Gene ID: | 64788 |
Gene Name: | lipase maturation factor 1 |
Gene Aliases: |
C16orf26, HMFN1876, JFP11, TMEM112, TMEM112A |
Location: |
Chr.16:853632-981615 on Build GRCh38 |
Assay Gene Location: | Within Exon 21 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LMF1 | NM_022773.2 | NP_073610.2 | ||
NR_033645.1 | ||||
NR_033646.1 | ||||
XM_006720928.2 | XP_006720991.1 | |||
XM_006720929.3 | XP_006720992.1 | |||
XM_011522617.2 | XP_011520919.1 | |||
XM_017023575.1 | 11 | 2351 | XP_016879064.1 | |
XM_017023576.1 | XP_016879065.1 | |||
XM_017023577.1 | XP_016879066.1 | |||
XM_017023578.1 | XP_016879067.1 | |||
XM_017023579.1 | XP_016879068.1 | |||
XM_017023580.1 | XP_016879069.1 | |||
AB075873.1 | BAD38655.1 | |||
AK022743.1 | BAB14218.1 | |||
AK025955.1 | BAB15295.1 | |||
AK093050.1 | ||||
AK125201.1 | ||||
AK225065.1 | ||||
AK225406.1 | ||||
AL832177.1 | ||||
BC010738.1 | AAH10738.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv571046 | Chr.16:828324 - 1202441 on Build GRCh38 | Gain | LMF1 LMF1-AS1 SOX8 CACNA1H C1QTNF8 SSTR5-AS1 SSTR5 LOC107984876 |
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | C16orf59 PIGQ RAB40C SOX8 NTN3 RPL3L PRR35 SNORA64 UBE2I LINC00235 RGS11 LOC100287175 NPW FLJ42627 METTL26 STUB1 ABCA3 MPG RNPS1 PKD1 LOC100134368 HBA2 PRSS27 HN1L MIR3178 PRR25 LOC105371046 SNORA78 RHBDF1 IFT140 MIR5587 CHTF18 CASKIN1 UNKL MIR6768 SNHG9 LINC00254 TBL3 MRPL28 MIR6511B1 ABCA17P PDIA2 FAHD1 WFIKKN1 SNORD60 AXIN1 LOC105371038 FAM234A CCNF CRAMP1 NOXO1 TMEM8A NDUFB10 GNPTG HBZ MIR3180-5 LMF1 MIR1225 HBM DECR2 BAIAP3 LUC7L CACNA1H MIR6859-4 SSTR5-AS1 TPSD1 NHLRC4 PRSS29P CAPN15 HAGH LOC105371049 JMJD8 MSLN FBXL16 LOC107984876 SNORA10 ERVK13-1 ARHGDIG HAGHL C1QTNF8 CLCN7 GNG13 SNRNP25 RAB26 HS3ST6 WDR90 LOC729652 KCTD5 E4F1 LOC101929280 SSTR5 LOC652276 DDX11L10 MIR3176 PGP AMDHD2 NPRL3 SNHG19 EME2 ECI1 NME4 ATP6V0C HBA1 C16orf91 PTX4 LOC105371047 NUBP2 TBC1D24 WASIR2 RHOT2 LOC105371184 MIR6767 MIR3177 SPSB3 BRICD5 IGFALS MAPK8IP3 NTHL1 DNASE1L2 MIR4717 MSRB1 GFER SYNGR3 LOC105371045 RNF151 MLST8 PDPK1 ZNF598 FAM173A TPSB2 METRN POLR3K RPUSD1 LOC107987233 MIR662 TSR3 MCRIP2 LMF1-AS1 NARFL TELO2 RPS2 RPL23AP5 MRPS34 NME3 TMEM204 TPSAB1 RHBDL1 MIR3677 CCDC154 CCDC78 LOC106660606 SLC9A3R2 RAB11FIP3 TPSG1 MIR4516 TSC2 WDR24 MIR940 MEIOB HBQ1 TRAF7 CEMP1 |
esv3637586 | Chr.16:798995 - 892120 on Build GRCh38 | Loss | LMF1 PRR25 GNG13 |
esv3637595 | Chr.16:859147 - 890552 on Build GRCh38 | Loss | LMF1 |
nsv1704 | Chr.16:836423 - 867931 on Build GRCh38 | Insertion | LMF1 |
nsv1046349 | Chr.16:819378 - 942590 on Build GRCh38 | Loss | LMF1 LMF1-AS1 LOC107984876 |
nsv9326 | Chr.16:856661 - 867235 on Build GRCh38 | Loss | LMF1 |
nsv952898 | Chr.16:495001 - 1132900 on Build GRCh38 | Deletion | LOC105371038 PIGQ WDR90 RAB40C SOX8 PRR35 LOC101929280 LINC00235 FAM173A SSTR5 METRN LOC100287175 RPUSD1 LOC107987233 MIR662 METTL26 LMF1 MCRIP2 STUB1 LMF1-AS1 NARFL MIR3176 SSTR5-AS1 NHLRC4 RHBDL1 CCDC78 PRR25 CAPN15 JMJD8 MSLN MIR5587 CHTF18 FBXL16 RAB11FIP3 LOC107984876 WDR24 RHOT2 LOC105371184 HAGHL C1QTNF8 WFIKKN1 GNG13 |
More Information
Additional Information:
For this assay, SNP(s) [rs111774320] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |