Hs03946824_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89878560 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2			NP_055787.1
	XM_005256297.2			XP_005256354.1
	XM_005256298.2			XP_005256355.1
	XM_005256299.2			XP_005256356.1
	XM_011522956.2			XP_011521258.1
	XM_011522957.2			XP_011521259.1
	XM_011522958.2			XP_011521260.1
	XM_011522959.2			XP_011521261.1
	XM_011522960.2			XP_011521262.1
	XM_011522961.2	2	370	XP_011521263.1
	XM_017023047.1			XP_016878536.1
	XM_017023048.1			XP_016878537.1
	XM_017023049.1			XP_016878538.1
	XM_017023050.1			XP_016878539.1
	XM_017023051.1			XP_016878540.1
	XM_017023052.1			XP_016878541.1
	XM_017023053.1	2	808	XP_016878542.1
	XM_017023054.1	2	370	XP_016878543.1
	XM_017023055.1	2	370	XP_016878544.1
	XM_017023056.1	2	377	XP_016878545.1
	XM_017023057.1	2	808	XP_016878546.1
	XM_017023058.1	2	808	XP_016878547.1
	AF322111.1			AAG50276.1
	AK024679.1			BAB14959.1
	AK301053.1
	BC000959.1			AAH00959.1
	BC009349.2			AAH09349.1
	BC011884.2			AAH11884.1
	BI913551.1
	DQ321703.1			ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv573744	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	SPIRE2 LOC107984817 LOC105371419 ZNF276 FANCA TCF25
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	SPIRE2 LOC107984817 LOC105371419 FANCA TCF25
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	VPS9D1 LOC107984817 SPATA2L ZNF276 CDK10 GAS8 CENPBD1 FANCA TUBB3 TCF25 DPEP1 VPS9D1-AS1 MC1R SPIRE2 LOC105371419 DBNDD1 SPATA33 DEF8 GAS8-AS1 CHMP1A AFG3L1P
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	MC1R SPIRE2 DBNDD1 GAS8 DEF8 GAS8-AS1 CENPBD1 TUBB3 TCF25 AFG3L1P
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	VPS9D1 RPL13 LOC107984817 CPNE7 ZNF276 LOC105371414 CDK10 GAS8 CENPBD1 FANCA FAM157C TUBB3 PRDM7 SPIRE2 URAHP DBNDD1 GAS8-AS1 SPG7 LOC101927817 LOC100287036 ZNF778 CHMP1A AFG3L1P SPATA2L ANKRD11 TUBB8P7 TCF25 DPEP1 VPS9D1-AS1 MC1R LOC105371419 SPATA33 DEF8 SNORD68
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	MC1R SPIRE2 LOC105371419 DBNDD1 GAS8 DEF8 CENPBD1 TUBB3 TCF25 AFG3L1P
nsv9479	Chr.16:89878586 - 89880246 on Build GRCh38	Gain	TCF25
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	VPS9D1 CDT1 TRAPPC2L CPNE7 ZNF276 SNAI3 LOC105371414 LOC100129697 SPIRE2 URAHP GAS8-AS1 LOC100287036 CHMP1A AFG3L1P SPATA2L ANKRD11 LOC107987238 APRT TCF25 DPEP1 VPS9D1-AS1 MC1R LOC100289580 LOC105371419 IL17C SPATA33 DEF8 CBFA2T3 SNORD68 LOC105371409 RPL13 LOC107984817 MVD CDK10 GAS8 CENPBD1 FANCA FAM157C TUBB3 SNAI3-AS1 PRDM7 SLC22A31 DBNDD1 PIEZO1 CTU2 LOC339059 SPG7 LOC101927817 ZNF778 MIR4722 PABPN1L GALNS TUBB8P7 LINC00304 LOC400558 CYBA LOC101927793 RNF166 ACSF3 CDH15

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding