Assay Details
Target Gene Details
Entrez Gene ID: | 84231 |
Gene Name: | TNF receptor associated factor 7 |
Gene Aliases: |
RFWD1, RNF119 |
Location: |
Chr.16:2155752-2178129 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRAF7 | NM_032271.2 | NP_115647.2 | ||
XM_005255627.4 | XP_005255684.1 | |||
XM_011522700.1 | XP_011521002.1 | |||
AK090624.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv3637629 | Chr.16:2162205 - 2163028 on Build GRCh38 | Loss | TRAF7 |
esv2666961 | Chr.16:2162226 - 2163040 on Build GRCh38 | Deletion | TRAF7 |
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | SNORA64 BAIAP3 TMEM204 PRR35 MIR662 DECR2 MRPL28 WDR24 LOC105371047 HBZ CEMP1 JMJD8 RHOT2 POLR3K HBQ1 MIR940 METRN STUB1 RNPS1 IFT140 HAGHL METTL26 TSR3 HAGH RPUSD1 HBA1 SNHG19 DDX11L10 SNHG9 FLJ42627 CCDC154 ABCA3 ERVK13-1 LOC105371045 LOC105371046 GNG13 TRAF7 HS3ST6 TPSD1 FAM234A RAB40C AMDHD2 MEIOB CCDC78 MIR3177 LOC107987233 LOC100287175 RAB26 IGFALS MIR6511B1 ABCA17P BRICD5 MIR1225 CAPN15 TSC2 NTN3 FAHD1 SLC9A3R2 RPL23AP5 LINC00235 CLCN7 MIR4516 GNPTG SNORA10 TPSAB1 SSTR5 SOX8 RPS2 NTHL1 RAB11FIP3 C1QTNF8 LOC105371049 NUBP2 LOC105371184 TBC1D24 SNORA78 LUC7L UNKL RHBDF1 CCNF MIR6768 MIR3180-5 UBE2I KCTD5 RNF151 PDPK1 LOC101929280 WASIR2 WDR90 MSRB1 C16orf59 NOXO1 NHLRC4 EME2 NME4 TELO2 GFER ECI1 LOC729652 RPL3L MPG FBXL16 LMF1-AS1 FAM173A ARHGDIG RGS11 PRSS29P E4F1 LOC107984876 TBL3 MIR3176 C16orf91 MIR3178 MIR3677 SPSB3 PIGQ TPSG1 HBA2 AXIN1 NME3 ZNF598 NPRL3 WFIKKN1 MCRIP2 DNASE1L2 SNRNP25 MIR6859-4 LOC106660606 MIR6767 RHBDL1 ATP6V0C PGP MIR4717 NPW LOC100134368 CRAMP1 MRPS34 CHTF18 SSTR5-AS1 SYNGR3 MIR5587 PRSS27 PTX4 MLST8 CASKIN1 NDUFB10 LINC00254 CACNA1H PRR25 NARFL LMF1 LOC105371038 MAPK8IP3 TPSB2 HN1L TMEM8A SNORD60 MSLN PDIA2 PKD1 LOC652276 HBM |
nsv471072 | Chr.16:1971892 - 2317508 on Build GRCh38 | Loss | ZNF598 RAB26 DNASE1L2 MIR6511B1 BRICD5 MIR1225 NOXO1 TSC2 SLC9A3R2 GFER ECI1 LOC106660606 MIR4516 PGP MIR4717 NPW MIR940 RNPS1 NTHL1 SYNGR3 SNHG19 LOC105371049 MLST8 CASKIN1 E4F1 ABCA3 TBL3 SNORD60 TRAF7 PKD1 MIR3180-5 MIR3677 |
dgv4861n54 | Chr.16:2083900 - 2246850 on Build GRCh38 | Loss | SNHG19 LOC105371049 MLST8 CASKIN1 RAB26 DNASE1L2 MIR6511B1 BRICD5 MIR1225 E4F1 TSC2 ECI1 SNORD60 MIR4516 PGP TRAF7 PKD1 MIR3180-5 |
dgv4863n54 | Chr.16:2141733 - 2274302 on Build GRCh38 | Loss | SNHG19 MLST8 CASKIN1 RAB26 DNASE1L2 BRICD5 E4F1 ECI1 SNORD60 LOC106660606 PGP TRAF7 MIR940 RNPS1 MIR3677 |
nsv457349 | Chr.16:2055054 - 2200730 on Build GRCh38 | Loss | MIR4516 SNHG19 LOC105371049 CASKIN1 RAB26 MIR6511B1 TRAF7 MIR1225 PKD1 MIR3180-5 TSC2 SNORD60 |
nsv457351 | Chr.16:2156590 - 2274302 on Build GRCh38 | Loss | LOC106660606 MLST8 CASKIN1 PGP DNASE1L2 TRAF7 BRICD5 MIR940 E4F1 RNPS1 MIR3677 ECI1 |
nsv1052260 | Chr.16:2074546 - 2629655 on Build GRCh38 | Gain | RAB26 DNASE1L2 MIR6511B1 ABCA17P BRICD5 MIR1225 C16orf59 TSC2 NTN3 ECI1 LOC729652 LOC106660606 MIR6767 MIR4516 CEMP1 ATP6V0C PGP MIR4717 MIR940 RNPS1 SNHG19 LOC105371049 MLST8 CASKIN1 E4F1 TBC1D24 ABCA3 SNORD60 CCNF TRAF7 MIR6768 PKD1 MIR3180-5 MIR3178 AMDHD2 MIR3677 PDPK1 LOC652276 |
nsv952902 | Chr.16:2143400 - 2339999 on Build GRCh38 | Deletion | SNHG19 MLST8 CASKIN1 RAB26 DNASE1L2 BRICD5 E4F1 ABCA3 ECI1 SNORD60 LOC106660606 PGP MIR4717 TRAF7 MIR940 RNPS1 MIR3677 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |