Assay Details
Target Gene Details
Entrez Gene ID: | 9727 |
Gene Name: | RAB11 family interacting protein 3 |
Gene Aliases: |
CART1, Rab11-FIP3 |
Location: |
Chr.16:425621-522485 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
RAB11FIP3 | NM_014700.3 | NP_055515.1 | ||
XM_005255713.3 | XP_005255770.1 | |||
XM_005255717.3 | XP_005255774.1 | |||
XM_005255718.3 | XP_005255775.1 | |||
XM_017023907.1 | XP_016879396.1 | |||
AB014565.1 | ||||
AF395731.1 | AAL12940.1 | |||
BC051360.1 | AAH51360.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | FAHD1 RAB40C LUC7L CRAMP1 CCDC154 MIR5587 LOC100134368 ZNF598 NME4 SLC9A3R2 JMJD8 NPRL3 PRSS27 LOC105371047 HN1L TPSB2 LINC00235 CAPN15 LOC105371045 TSC2 E4F1 TPSAB1 MIR3177 WDR24 PRR35 MIR940 ABCA3 MIR3677 UBE2I HBZ HAGH LOC105371038 MIR4717 TELO2 SSTR5-AS1 MEIOB PIGQ HS3ST6 RHBDL1 MIR6767 PGP RPL23AP5 NME3 GNG13 AXIN1 WASIR2 DDX11L10 SNHG9 SNORD60 PDPK1 NARFL MPG LOC100287175 LOC107987233 EME2 MIR1225 C16orf59 CCNF NOXO1 IGFALS HBA2 HBA1 WDR90 ERVK13-1 MIR3180-5 LINC00254 TPSG1 RAB26 NTN3 LOC107984876 LOC105371184 SNORA10 PDIA2 CHTF18 C16orf91 IFT140 C1QTNF8 NHLRC4 SNORA78 UNKL LOC106660606 MRPS34 NUBP2 MIR4516 LOC105371049 MIR6511B1 CASKIN1 MCRIP2 PKD1 RPUSD1 PTX4 LMF1 RHBDF1 MSRB1 WFIKKN1 MIR6768 TBL3 TRAF7 CACNA1H LOC729652 TPSD1 RGS11 TMEM204 CEMP1 FAM173A MRPL28 RHOT2 AMDHD2 FBXL16 GNPTG LOC652276 BAIAP3 ATP6V0C DECR2 HBM CCDC78 MIR3176 LOC105371046 MIR6859-4 MIR662 LMF1-AS1 STUB1 TBC1D24 FLJ42627 MLST8 SSTR5 RNF151 SNHG19 KCTD5 SNRNP25 TSR3 GFER DNASE1L2 PRSS29P RAB11FIP3 NTHL1 SPSB3 ABCA17P BRICD5 NPW TMEM8A RPS2 RPL3L NDUFB10 CLCN7 HBQ1 LOC101929280 METRN SOX8 ARHGDIG ECI1 MIR3178 POLR3K METTL26 HAGHL RNPS1 SYNGR3 PRR25 SNORA64 MAPK8IP3 FAM234A MSLN |
dgv4810n54 | Chr.16:380011 - 445662 on Build GRCh38 | Loss | RAB11FIP3 TMEM8A DECR2 RPL23AP5 LOC100134368 NME4 |
nsv9320 | Chr.16:427245 - 432556 on Build GRCh38 | Loss | RAB11FIP3 |
esv3637563 | Chr.16:263248 - 505590 on Build GRCh38 | Gain | RAB11FIP3 TMEM8A RGS11 DECR2 MRPL28 PDIA2 RPL23AP5 LOC100134368 AXIN1 ARHGDIG FAM234A NME4 |
nsv570956 | Chr.16:376432 - 437728 on Build GRCh38 | Gain | RAB11FIP3 TMEM8A DECR2 RPL23AP5 LOC100134368 NME4 |
nsv570954 | Chr.16:342461 - 530124 on Build GRCh38 | Loss | RAB11FIP3 TMEM8A DECR2 MRPL28 LINC00235 CAPN15 RPL23AP5 LOC100134368 AXIN1 NME4 |
nsv457303 | Chr.16:383623 - 445662 on Build GRCh38 | Loss | RAB11FIP3 DECR2 RPL23AP5 LOC100134368 NME4 |
dgv4809n54 | Chr.16:322597 - 451362 on Build GRCh38 | Loss | RAB11FIP3 TMEM8A DECR2 MRPL28 RPL23AP5 LOC100134368 AXIN1 NME4 |
dgv32n68 | Chr.16:245507 - 476226 on Build GRCh38 | Loss | RAB11FIP3 TMEM8A RGS11 DECR2 MRPL28 PDIA2 RPL23AP5 LOC100134368 AXIN1 ARHGDIG FAM234A NME4 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |