Assay Details
Target Gene Details
Entrez Gene ID: | 84231 |
Gene Name: | TNF receptor associated factor 7 |
Gene Aliases: |
RFWD1, RNF119 |
Location: |
Chr.16:2155752-2178129 on Build GRCh38 |
Assay Gene Location: | Within Intron 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRAF7 | NM_032271.2 | NP_115647.2 | ||
XM_005255627.4 | XP_005255684.1 | |||
XM_011522700.1 | XP_011521002.1 | |||
AK090624.1 | ||||
AL136921.1 | CAB66855.1 | |||
AY569455.1 | AAS68363.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | FAM234A TMEM204 WDR90 LOC105371046 TSC2 RHBDF1 ECI1 ARHGDIG TPSG1 MSRB1 MIR1225 MIR3180-5 MIR3177 MIR662 ABCA3 ZNF598 TSR3 TMEM8A RNF151 RGS11 PDPK1 DECR2 FBXL16 LMF1-AS1 HBM C16orf59 SNRNP25 GNPTG SPSB3 PKD1 SSTR5 TRAF7 PGP HBA1 SSTR5-AS1 MIR6511B1 MIR3176 PRR25 SNORA64 RPL3L HAGH NARFL BAIAP3 LOC105371047 SNHG9 EME2 FAHD1 LMF1 PIGQ METTL26 HBA2 MRPS34 STUB1 RAB26 MIR4516 TPSB2 RPUSD1 SNHG19 MIR6767 MEIOB DDX11L10 KCTD5 MPG WASIR2 MIR4717 MIR940 JMJD8 LOC652276 LUC7L SNORA10 PRR35 FLJ42627 ABCA17P MRPL28 RPS2 WFIKKN1 UBE2I CACNA1H HN1L RHOT2 TBC1D24 NME3 C16orf91 NPRL3 NTN3 LINC00254 TBL3 PRSS29P PTX4 WDR24 MIR6859-4 SOX8 RAB11FIP3 METRN RHBDL1 CCDC78 MIR3677 C1QTNF8 BRICD5 LOC105371038 ERVK13-1 NHLRC4 MIR3178 HBZ TPSD1 CRAMP1 LOC107984876 PRSS27 IFT140 MAPK8IP3 CCDC154 LOC100287175 TELO2 CEMP1 LOC105371049 PDIA2 AXIN1 LOC107987233 LOC106660606 MCRIP2 MSLN RPL23AP5 NUBP2 IGFALS NME4 CLCN7 SNORA78 LOC729652 GNG13 LOC105371045 AMDHD2 UNKL RAB40C FAM173A CASKIN1 HS3ST6 LOC101929280 SLC9A3R2 CAPN15 MIR6768 RNPS1 CCNF GFER NPW DNASE1L2 NTHL1 HAGHL POLR3K TPSAB1 ATP6V0C NOXO1 MLST8 E4F1 LOC100134368 LINC00235 SNORD60 MIR5587 CHTF18 SYNGR3 HBQ1 LOC105371184 NDUFB10 |
nsv471072 | Chr.16:1971892 - 2317508 on Build GRCh38 | Loss | TSC2 ECI1 TBL3 MIR1225 MIR3180-5 RAB26 ABCA3 MIR4516 ZNF598 MIR3677 SNHG19 CASKIN1 MIR4717 BRICD5 SLC9A3R2 MIR940 RNPS1 GFER NPW DNASE1L2 NTHL1 PKD1 NOXO1 MLST8 E4F1 TRAF7 PGP MIR6511B1 SNORD60 LOC105371049 SYNGR3 LOC106660606 |
dgv4861n54 | Chr.16:2083900 - 2246850 on Build GRCh38 | Loss | BRICD5 TSC2 ECI1 DNASE1L2 MIR1225 PKD1 MLST8 E4F1 MIR3180-5 RAB26 TRAF7 PGP MIR4516 MIR6511B1 SNORD60 LOC105371049 SNHG19 CASKIN1 |
dgv4863n54 | Chr.16:2141733 - 2274302 on Build GRCh38 | Loss | BRICD5 MIR940 RNPS1 ECI1 DNASE1L2 MLST8 E4F1 RAB26 TRAF7 PGP SNORD60 MIR3677 SNHG19 CASKIN1 LOC106660606 |
nsv457349 | Chr.16:2055054 - 2200730 on Build GRCh38 | Loss | MIR3180-5 RAB26 TRAF7 MIR4516 TSC2 MIR6511B1 SNORD60 LOC105371049 SNHG19 CASKIN1 MIR1225 PKD1 |
nsv457351 | Chr.16:2156590 - 2274302 on Build GRCh38 | Loss | MLST8 E4F1 BRICD5 MIR940 TRAF7 PGP RNPS1 MIR3677 ECI1 CASKIN1 DNASE1L2 LOC106660606 |
nsv1052260 | Chr.16:2074546 - 2629655 on Build GRCh38 | Gain | NTN3 TSC2 ECI1 MIR1225 LOC729652 MIR3180-5 RAB26 AMDHD2 ABCA3 MIR4516 MIR3677 SNHG19 CASKIN1 MIR6767 PDPK1 MIR4717 BRICD5 MIR940 MIR6768 LOC652276 RNPS1 CCNF MIR3178 C16orf59 DNASE1L2 ABCA17P PKD1 ATP6V0C MLST8 E4F1 TRAF7 PGP TBC1D24 MIR6511B1 CEMP1 SNORD60 LOC105371049 LOC106660606 |
nsv952902 | Chr.16:2143400 - 2339999 on Build GRCh38 | Deletion | MIR4717 BRICD5 MIR940 RNPS1 ECI1 DNASE1L2 MLST8 E4F1 RAB26 TRAF7 PGP ABCA3 SNORD60 MIR3677 SNHG19 CASKIN1 LOC106660606 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |