Hs03921378_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89900188 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Within Intron 13

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2			NP_055787.1
	XM_005256297.2			XP_005256354.1
	XM_005256298.2			XP_005256355.1
	XM_005256299.2			XP_005256356.1
	XM_011522956.2			XP_011521258.1
	XM_011522957.2			XP_011521259.1
	XM_011522958.2			XP_011521260.1
	XM_011522959.2			XP_011521261.1
	XM_011522960.2			XP_011521262.1
	XM_011522961.2			XP_011521263.1
	XM_017023047.1			XP_016878536.1
	XM_017023048.1			XP_016878537.1
	XM_017023049.1			XP_016878538.1
	XM_017023050.1			XP_016878539.1
	XM_017023051.1			XP_016878540.1
	XM_017023052.1			XP_016878541.1
	XM_017023053.1			XP_016878542.1
	XM_017023054.1			XP_016878543.1
	XM_017023055.1			XP_016878544.1
	XM_017023056.1			XP_016878545.1
	XM_017023057.1			XP_016878546.1
	XM_017023058.1			XP_016878547.1
	AB028972.1			BAA83001.1
	AF130092.1			AAG35518.1
	AF322111.1			AAG50276.1
	BC000959.1			AAH00959.1
	BC009349.2			AAH09349.1
	BC011884.2			AAH11884.1
	DQ321703.1			ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv573744	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	LOC107984817 TCF25 LOC105371419 FANCA ZNF276 SPIRE2
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	LOC107984817 TCF25 LOC105371419 FANCA SPIRE2
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	SPATA33 CENPBD1 TUBB3 DPEP1 TCF25 AFG3L1P SPIRE2 GAS8 VPS9D1-AS1 MC1R CDK10 LOC107984817 SPATA2L CHMP1A DEF8 GAS8-AS1 LOC105371419 FANCA ZNF276 DBNDD1 VPS9D1
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	CENPBD1 TUBB3 TCF25 AFG3L1P DEF8 GAS8-AS1 SPIRE2 DBNDD1 GAS8 MC1R
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	CENPBD1 DPEP1 AFG3L1P SPG7 SPIRE2 GAS8 VPS9D1-AS1 MC1R CDK10 SPATA2L CPNE7 DEF8 GAS8-AS1 LOC105371419 FANCA ZNF276 LOC105371414 SPATA33 RPL13 TUBB3 FAM157C TCF25 URAHP PRDM7 LOC107984817 LOC100287036 SNORD68 CHMP1A ZNF778 LOC101927817 DBNDD1 ANKRD11 TUBB8P7 VPS9D1
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	CENPBD1 TUBB3 TCF25 AFG3L1P DEF8 LOC105371419 SPIRE2 DBNDD1 GAS8 MC1R
nsv509640	Chr.16:89899749 - 89969797 on Build GRCh38	Insertion	CENPBD1 TUBB3 TCF25 DEF8 MC1R
nsv1066499	Chr.16:89891957 - 90028891 on Build GRCh38	Loss	CENPBD1 TUBB3 TCF25 AFG3L1P DEF8 DBNDD1 GAS8 MC1R
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LINC00304 DPEP1 ACSF3 SPG7 SNAI3 PIEZO1 SPIRE2 MC1R MIR4722 SPATA2L SNAI3-AS1 CPNE7 LOC100289580 DEF8 GAS8-AS1 LOC105371419 CDT1 LOC107987238 PABPN1L TRAPPC2L LOC105371414 RPL13 LOC100129697 TUBB3 APRT PRDM7 MVD LOC101927793 LOC107984817 LOC100287036 SNORD68 CYBA CDH15 ZNF778 LOC101927817 ANKRD11 TUBB8P7 VPS9D1 CENPBD1 AFG3L1P RNF166 GAS8 VPS9D1-AS1 CDK10 LOC400558 SLC22A31 FANCA ZNF276 IL17C SPATA33 FAM157C TCF25 LOC105371409 URAHP CTU2 CHMP1A GALNS LOC339059 DBNDD1 CBFA2T3

More Information

Additional Information:

For this assay, SNP(s) [rs142778558] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding