Assay Details
Target Gene Details
Entrez Gene ID: | 23359 |
Gene Name: | family with sequence similarity 189 member A1 |
Gene Aliases: |
TMEM228 |
Location: |
Chr.15:29120252-29570723 on Build GRCh38 |
Assay Gene Location: | Within Exon 12 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
FAM189A1 | NM_015307.1 | 11 | 4632 | NP_056122.1 |
XM_011521407.2 | 12 | 4789 | XP_011519709.1 | |
AB011146.1 | 8 | 4232 | BAA25500.1 | |
AI364989.1 | 1 | 87 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1040778 | Chr.15:28689598 - 30515727 on Build GRCh38 | Loss | CHRFAM7A LOC105370746 FAM189A1 LOC105370751 LOC107984752 PDCD6IPP2 TJP1 LOC100130111 NSMCE3 GOLGA8R GOLGA6L7P APBA2 LOC101060569 GOLGA8M GOLGA8T ULK4P3 DKFZP434L187 LOC100289656 GOLGA8J WHAMMP2 |
nsv568678 | Chr.15:29090260 - 29120363 on Build GRCh38 | Loss | APBA2 FAM189A1 |
nsv9228 | Chr.15:29118128 - 29122991 on Build GRCh38 | Loss | APBA2 FAM189A1 |
nsv515798 | Chr.15:29068198 - 29146274 on Build GRCh38 | Gain+Loss | APBA2 FAM189A1 |
esv2525505 | Chr.15:29118530 - 29120341 on Build GRCh38 | Deletion | FAM189A1 |
nsv471232 | Chr.15:29087561 - 29139979 on Build GRCh38 | Loss | APBA2 FAM189A1 |
nsv527255 | Chr.15:28754022 - 30074044 on Build GRCh38 | Gain | APBA2 FAM189A1 LOC107984752 PDCD6IPP2 TJP1 LOC100130111 NSMCE3 LOC100289656 GOLGA6L7P WHAMMP2 |
esv2751526 | Chr.15:28724519 - 30687025 on Build GRCh38 | Loss | LOC100996413 LOC105370746 FAM189A1 LOC105370751 LOC101927579 ULK4P2 LOC107984752 PDCD6IPP2 TJP1 LOC100130111 GOLGA8R GOLGA6L7P GOLGA8H LOC101060569 GOLGA8T ARHGAP11B DKFZP434L187 WHAMMP2 CHRFAM7A LOC100288637 NSMCE3 APBA2 ULK4P3 LOC100289656 GOLGA8J |
nsv1039798 | Chr.15:28724126 - 30158154 on Build GRCh38 | Gain | FAM189A1 LOC107984752 PDCD6IPP2 TJP1 LOC100130111 NSMCE3 GOLGA6L7P APBA2 GOLGA8T ULK4P3 LOC100289656 GOLGA8J WHAMMP2 |
nsv568679 | Chr.15:29119123 - 29126370 on Build GRCh38 | Loss | FAM189A1 |
nsv568675 | Chr.15:29035149 - 29916451 on Build GRCh38 | Gain | APBA2 FAM189A1 TJP1 LOC100130111 NSMCE3 |
nsv524362 | Chr.15:29089598 - 29155854 on Build GRCh38 | Loss | APBA2 FAM189A1 |
More Information
Additional Information:
For this assay, SNP(s) [rs80295632] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |