Assay Details
Target Gene Details
Entrez Gene ID: | 50614 |
Gene Name: | polypeptide N-acetylgalactosaminyltransferase 9 |
Gene Aliases: |
GALNAC-T9, GALNACT9 |
Location: |
Chr.12:132195829-132329364 on Build GRCh38 |
Assay Gene Location: | Within Intron 15 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GALNT9 | NM_001122636.1 | NP_001116108.1 | ||
NM_021808.3 | NP_068580.2 | |||
XM_017019371.1 | XP_016874860.1 | |||
XM_017019372.1 | XP_016874861.1 | |||
XM_017019373.1 | XP_016874862.1 | |||
XM_017019374.1 | XP_016874863.1 | |||
AB040672.2 | BAB13699.2 | |||
AF458594.1 | AAM49722.1 | |||
AJ505960.1 | CAD44540.1 | |||
AK054820.1 | ||||
AK055773.1 | ||||
BC093817.1 | ||||
BC093819.1 | ||||
CB154648.1 | ||||
DR001000.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv3019n54 | Chr.12:132181784 - 132203592 on Build GRCh38 | Loss | GALNT9 |
nsv560966 | Chr.12:132194518 - 132483313 on Build GRCh38 | Gain | LOC105370092 LOC101928416 MUC8 GALNT9 LOC100130238 |
esv3631288 | Chr.12:132190709 - 132205907 on Build GRCh38 | Gain | GALNT9 |
esv3892285 | Chr.12:132154873 - 132201281 on Build GRCh38 | Gain | GALNT9 |
esv3580551 | Chr.12:132196503 - 132206310 on Build GRCh38 | Loss | GALNT9 |
nsv952512 | Chr.12:132192256 - 132711214 on Build GRCh38 | Deletion | LOC105370092 PXMP2 LOC101928416 MIR6763 FBRSL1 PGAM5 MUC8 P2RX2 LOC100996573 GALNT9 LOC100130238 POLE LRCOL1 |
nsv1041402 | Chr.12:132076412 - 132441297 on Build GRCh38 | Gain | NOC4L LOC105370092 DDX51 LOC101928416 EP400 EP400NL GALNT9 LOC100130238 |
nsv528119 | Chr.12:132174775 - 132218324 on Build GRCh38 | Loss | GALNT9 |
nsv826563 | Chr.12:132125383 - 132622340 on Build GRCh38 | Gain | LOC105370092 LOC101928416 MIR6763 FBRSL1 NOC4L DDX51 MUC8 P2RX2 EP400NL LOC100996573 GALNT9 LOC100130238 LRCOL1 |
dgv103n21 | Chr.12:132117051 - 132442096 on Build GRCh38 | Loss | NOC4L LOC105370092 DDX51 LOC101928416 EP400NL GALNT9 LOC100130238 |
nsv428285 | Chr.12:132065104 - 132208513 on Build GRCh38 | Gain | NOC4L DDX51 EP400 EP400NL GALNT9 |
More Information
Additional Information:
For this assay, SNP(s) [rs148144236] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |