Assay Details
Target Gene Details
Entrez Gene ID: | 50614 |
Gene Name: | polypeptide N-acetylgalactosaminyltransferase 9 |
Gene Aliases: |
GALNAC-T9, GALNACT9 |
Location: |
Chr.12:132195829-132329364 on Build GRCh38 |
Assay Gene Location: | Within Intron 10 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GALNT9 | NM_001122636.1 | NP_001116108.1 | ||
XM_017019371.1 | XP_016874860.1 | |||
XM_017019372.1 | XP_016874861.1 | |||
XM_017019373.1 | XP_016874862.1 | |||
XM_017019374.1 | XP_016874863.1 | |||
AB040672.2 | BAB13699.2 | |||
AK054820.1 | ||||
AK055773.1 | ||||
DR001000.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv560966 | Chr.12:132194518 - 132483313 on Build GRCh38 | Gain | LOC101928416 GALNT9 LOC100130238 LOC105370092 MUC8 |
nsv952512 | Chr.12:132192256 - 132711214 on Build GRCh38 | Deletion | LOC101928416 PGAM5 LOC100130238 PXMP2 GALNT9 MIR6763 P2RX2 POLE LOC100996573 LOC105370092 MUC8 FBRSL1 LRCOL1 |
nsv520897 | Chr.12:132199317 - 132218324 on Build GRCh38 | Loss | GALNT9 |
nsv1041402 | Chr.12:132076412 - 132441297 on Build GRCh38 | Gain | LOC101928416 GALNT9 LOC100130238 DDX51 EP400 LOC105370092 NOC4L EP400NL |
nsv528119 | Chr.12:132174775 - 132218324 on Build GRCh38 | Loss | GALNT9 |
nsv826563 | Chr.12:132125383 - 132622340 on Build GRCh38 | Gain | LOC101928416 LOC100130238 DDX51 GALNT9 MIR6763 P2RX2 LOC100996573 LOC105370092 MUC8 NOC4L FBRSL1 LRCOL1 EP400NL |
dgv103n21 | Chr.12:132117051 - 132442096 on Build GRCh38 | Loss | LOC101928416 GALNT9 LOC100130238 DDX51 LOC105370092 NOC4L EP400NL |
nsv428285 | Chr.12:132065104 - 132208513 on Build GRCh38 | Gain | GALNT9 DDX51 EP400 NOC4L EP400NL |
More Information
Additional Information:
For this assay, SNP(s) [rs73486342] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |