Assay Details
Target Gene Details
Entrez Gene ID: | 10522 |
Gene Name: | DEAF1, transcription factor |
Gene Aliases: |
MRD24, NUDR, SPN, ZMYND5 |
Location: |
Chr.11:644220-695754 on Build GRCh38 |
Assay Gene Location: | Within Intron 10 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
DEAF1 | NM_001293634.1 | NP_001280563.1 | ||
NM_021008.3 | NP_066288.2 | |||
XM_011519842.2 | XP_011518144.1 | |||
AB209831.1 | BAD93068.1 | |||
AF007165.1 | AAB62704.1 | |||
AF049459.1 | AAC79676.1 | |||
AF049460.1 | AAC79677.1 | |||
AF068892.1 | AAC25714.1 | |||
AF068893.1 | AAC25715.1 | |||
AF068894.1 | AAC25716.1 | |||
AF068895.1 | AAC25717.1 | |||
AF068896.1 | AAC25718.1 | |||
AF068897.1 | AAC25719.1 | |||
AK289873.1 | ||||
AK291383.1 | ||||
BC053322.1 | AAH53322.1 | |||
FJ985253.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv469923 | Chr.11:378188 - 1302334 on Build GRCh38 | Loss | RNH1 AP2A2 MIR210 PNPLA2 B4GALNT4 PTDSS2 DRD4 LOC101059906 EPS8L2 RPLP2 RASSF7 MUC6 TMEM80 PIDD1 PKP3 PANO1 LMNTD2 SCT PDDC1 ANO9 CHID1 TOLLIP MUC2 CEND1 DEAF1 CD151 POLR2L TSPAN4 SLC25A22 IRF7 CDHR5 PHRF1 HRAS LRRC56 LOC143666 MIR6744 MUC5AC SIGIRR CRACR2B MIR210HG MUC5B LOC101927503 SNORA52 LOC171391 TALDO1 |
nsv552861 | Chr.11:589246 - 662407 on Build GRCh38 | Loss | DEAF1 PHRF1 DRD4 SCT IRF7 CDHR5 |
nsv832043 | Chr.11:631027 - 758602 on Build GRCh38 | Loss | DEAF1 DRD4 EPS8L2 TMEM80 TALDO1 |
esv2759794 | Chr.11:409846 - 1336162 on Build GRCh38 | Loss | RNH1 AP2A2 MIR210 PNPLA2 PTDSS2 DRD4 LOC101059906 EPS8L2 TOLLIP-AS1 RPLP2 RASSF7 MUC6 TMEM80 PIDD1 PANO1 LMNTD2 SCT PDDC1 ANO9 CHID1 TOLLIP MUC2 CEND1 DEAF1 CD151 POLR2L TSPAN4 SLC25A22 IRF7 CDHR5 PHRF1 HRAS LRRC56 LOC143666 MIR6744 MUC5AC SIGIRR CRACR2B MIR210HG MUC5B LOC101927503 SNORA52 LOC171391 TALDO1 |
nsv1039558 | Chr.11:534242 - 672091 on Build GRCh38 | Gain | MIR210 DEAF1 DRD4 IRF7 CDHR5 RASSF7 PHRF1 HRAS LRRC56 LMNTD2 LOC143666 SCT MIR210HG |
nsv1053964 | Chr.11:491334 - 692433 on Build GRCh38 | Gain | RNH1 MIR210 DEAF1 PTDSS2 DRD4 LOC101059906 IRF7 CDHR5 RASSF7 PHRF1 HRAS LRRC56 LMNTD2 LOC143666 SCT MIR210HG |
dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion | RNH1 AP2A2 MIR210 PNPLA2 B4GALNT4 PTDSS2 DRD4 LOC101059906 EPS8L2 RPLP2 RASSF7 TMEM80 PIDD1 PKP3 PANO1 LMNTD2 SCT PDDC1 ANO9 CHID1 CEND1 DEAF1 CD151 POLR2L TSPAN4 SLC25A22 IRF7 CDHR5 PHRF1 HRAS LRRC56 LOC143666 SIGIRR CRACR2B MIR210HG SNORA52 LOC171391 TALDO1 |
dgv1525n54 | Chr.11:647869 - 688312 on Build GRCh38 | Loss | DEAF1 |
nsv1159791 | Chr.11:461793 - 909492 on Build GRCh38 | Deletion | RNH1 MIR210 PNPLA2 PTDSS2 DRD4 LOC101059906 EPS8L2 RPLP2 RASSF7 TMEM80 PIDD1 PANO1 LMNTD2 SCT PDDC1 CHID1 CEND1 DEAF1 CD151 POLR2L TSPAN4 SLC25A22 IRF7 CDHR5 PHRF1 HRAS LRRC56 LOC143666 CRACR2B MIR210HG SNORA52 LOC171391 TALDO1 |
More Information
Additional Information:
For this assay, SNP(s) [rs115293558] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |