Assay Details
Target Gene Details
Entrez Gene ID: | 10522 |
Gene Name: | DEAF1, transcription factor |
Gene Aliases: |
MRD24, NUDR, SPN, ZMYND5 |
Location: |
Chr.11:644220-695754 on Build GRCh38 |
Assay Gene Location: | Within Intron 10 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
DEAF1 | NM_001293634.1 | NP_001280563.1 | ||
NM_021008.3 | NP_066288.2 | |||
XM_011519842.2 | XP_011518144.1 | |||
AB209831.1 | BAD93068.1 | |||
AF007165.1 | AAB62704.1 | |||
AF049459.1 | AAC79676.1 | |||
AF049460.1 | AAC79677.1 | |||
AF068892.1 | AAC25714.1 | |||
AF068893.1 | AAC25715.1 | |||
AF068894.1 | AAC25716.1 | |||
AF068895.1 | AAC25717.1 | |||
AF068896.1 | AAC25718.1 | |||
AF068897.1 | AAC25719.1 | |||
AK289873.1 | ||||
AK291383.1 | ||||
BC053322.1 | AAH53322.1 | |||
FJ985253.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv469923 | Chr.11:378188 - 1302334 on Build GRCh38 | Loss | SNORA52 CHID1 DEAF1 PIDD1 PHRF1 LOC101927503 MIR210HG PTDSS2 TOLLIP PANO1 IRF7 SLC25A22 TSPAN4 RNH1 LOC143666 MIR210 TMEM80 LOC171391 EPS8L2 ANO9 MUC2 MIR6744 MUC5B CDHR5 RASSF7 SCT HRAS MUC5AC CD151 CEND1 AP2A2 PNPLA2 DRD4 PDDC1 TALDO1 LOC101059906 SIGIRR B4GALNT4 CRACR2B PKP3 POLR2L RPLP2 LRRC56 LMNTD2 MUC6 |
nsv552861 | Chr.11:589246 - 662407 on Build GRCh38 | Loss | DEAF1 SCT DRD4 PHRF1 IRF7 CDHR5 |
nsv832043 | Chr.11:631027 - 758602 on Build GRCh38 | Loss | DEAF1 DRD4 TMEM80 TALDO1 EPS8L2 |
esv2759794 | Chr.11:409846 - 1336162 on Build GRCh38 | Loss | SNORA52 CHID1 DEAF1 PIDD1 PHRF1 LOC101927503 MIR210HG PTDSS2 TOLLIP PANO1 IRF7 SLC25A22 TSPAN4 RNH1 LOC143666 MIR210 TMEM80 LOC171391 EPS8L2 ANO9 MUC2 MIR6744 MUC5B CDHR5 RASSF7 SCT HRAS MUC5AC CD151 CEND1 AP2A2 PNPLA2 DRD4 TOLLIP-AS1 PDDC1 TALDO1 LOC101059906 SIGIRR CRACR2B POLR2L RPLP2 LRRC56 LMNTD2 MUC6 |
nsv1039558 | Chr.11:534242 - 672091 on Build GRCh38 | Gain | DEAF1 SCT HRAS PHRF1 MIR210HG IRF7 LOC143666 DRD4 MIR210 LRRC56 LMNTD2 CDHR5 RASSF7 |
nsv1053964 | Chr.11:491334 - 692433 on Build GRCh38 | Gain | DEAF1 SCT HRAS PHRF1 MIR210HG PTDSS2 IRF7 RNH1 LOC143666 DRD4 MIR210 LOC101059906 LRRC56 LMNTD2 CDHR5 RASSF7 |
dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion | SNORA52 CHID1 DEAF1 PIDD1 PHRF1 MIR210HG PTDSS2 PANO1 IRF7 SLC25A22 TSPAN4 RNH1 LOC143666 MIR210 TMEM80 LOC171391 EPS8L2 ANO9 CDHR5 RASSF7 SCT HRAS CD151 CEND1 AP2A2 PNPLA2 DRD4 PDDC1 TALDO1 LOC101059906 SIGIRR B4GALNT4 CRACR2B PKP3 POLR2L RPLP2 LRRC56 LMNTD2 |
dgv1525n54 | Chr.11:647869 - 688312 on Build GRCh38 | Loss | DEAF1 |
nsv1159791 | Chr.11:461793 - 909492 on Build GRCh38 | Deletion | SNORA52 CHID1 DEAF1 PIDD1 PHRF1 MIR210HG PTDSS2 PANO1 IRF7 SLC25A22 TSPAN4 RNH1 LOC143666 MIR210 TMEM80 LOC171391 EPS8L2 CDHR5 RASSF7 SCT HRAS CD151 CEND1 PNPLA2 DRD4 PDDC1 TALDO1 LOC101059906 CRACR2B POLR2L RPLP2 LRRC56 LMNTD2 |
More Information
Additional Information:
For this assay, SNP(s) [rs72844744] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |