Assay Details
Target Gene Details
Entrez Gene ID: | 27158 |
Gene Name: | NADPH dependent diflavin oxidoreductase 1 |
Gene Aliases: |
NR1, bA350O14.9 |
Location: |
Chr.9:137205667-137219361 on Build GRCh38 |
Assay Gene Location: | Within Exon 13 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
NDOR1 | NM_001144026.2 | 14 | 3600 | NP_001137498.1 |
NM_001144027.2 | 13 | 3449 | NP_001137499.1 | |
NM_001144028.2 | 14 | 3552 | NP_001137500.1 | |
NM_014434.3 | 14 | 3573 | NP_055249.1 | |
XM_011518545.1 | 13 | 3488 | XP_011516847.1 | |
XM_011518547.1 | 14 | 3390 | XP_011516849.1 | |
XM_011518548.2 | 13 | 4790 | XP_011516850.1 | |
XM_017014627.1 | 14 | 3551 | XP_016870116.1 | |
AL133632.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv13010n54 | Chr.9:137191539 - 137233413 on Build GRCh38 | Loss | CYSRT1 TMEM203 TPRN SLC34A3 RNF224 RNF208 NDOR1 |
nsv616012 | Chr.9:137197680 - 137223834 on Build GRCh38 | Loss | TMEM203 TPRN RNF208 NDOR1 |
nsv616007 | Chr.9:137079368 - 137240666 on Build GRCh38 | Loss | MAN1B1 TMEM203 DPP7 LOC101930307 TPRN SLC34A3 LRRC26 MAN1B1-AS1 UAP1L1 SSNA1 CYSRT1 ANAPC2 TMEM210 GRIN1 MIR3621 RNF224 RNF208 NDOR1 |
dgv13009n54 | Chr.9:137173890 - 137327859 on Build GRCh38 | Loss | EXD3 TUBB4B TMEM203 TPRN SLC34A3 SSNA1 NRARP CYSRT1 TOR4A ANAPC2 STPG3 NELFB RNF224 C9orf173-AS1 RNF208 FAM166A NDOR1 |
nsv524322 | Chr.9:136795692 - 137482216 on Build GRCh38 | Loss | MAN1B1 TPRN LRRC26 FBXW5 MAN1B1-AS1 SAPCD2 MIR7114 NRARP MIR4479 MIR4292 GRIN1 MIR3621 EDF1 FAM166A ENTPD2 TUBB4B DPP7 LOC101930307 TRAF2 RABL6 UAP1L1 C9orf139 SSNA1 CYSRT1 LCNL1 PRR31 PTGDS NOXA1 FUT7 PNPLA7 PHPT1 SLC34A3 ABCA2 C9orf142 MAMDC4 C9orf172 ANAPC2 C8G STPG3 NSMF NELFB CLIC3 NPDC1 EXD3 TMEM203 LCN12 CCDC183 TOR4A ENTPD8 TMEM210 CCDC183-AS1 RNF224 C9orf173-AS1 RNF208 NDOR1 |
nsv951207 | Chr.9:137136949 - 137379148 on Build GRCh38 | Deletion | EXD3 TUBB4B TMEM203 TPRN SLC34A3 LRRC26 SSNA1 NRARP CYSRT1 TOR4A ANAPC2 TMEM210 STPG3 NELFB GRIN1 MIR3621 RNF224 C9orf173-AS1 RNF208 FAM166A NDOR1 |
nsv1161918 | Chr.9:137118319 - 137438026 on Build GRCh38 | Duplication | EXD3 TUBB4B TMEM203 TPRN SLC34A3 LRRC26 SSNA1 NRARP CYSRT1 TOR4A ENTPD8 ANAPC2 TMEM210 STPG3 NELFB GRIN1 MIR3621 RNF224 NOXA1 C9orf173-AS1 RNF208 FAM166A NDOR1 |
esv2422220 | Chr.9:136584135 - 137350098 on Build GRCh38 | Deletion | SNORA17B MAN1B1 TMEM141 HSPC324 TPRN LRRC26 FBXW5 MAN1B1-AS1 SAPCD2 NRARP MIR4479 LCN6 MIR4292 GRIN1 MIR3621 LCN10 EDF1 FAM166A ENTPD2 TUBB4B DPP7 LOC101930307 SNORA17A TRAF2 RABL6 UAP1L1 C9orf139 SSNA1 CYSRT1 LCNL1 LCN8 PRR31 MIR126 MIR6722 PTGDS LINC01451 FUT7 LCN15 PHPT1 SLC34A3 ABCA2 AGPAT2 C9orf142 MAMDC4 SNHG7 C9orf172 ANAPC2 C8G STPG3 NELFB CLIC3 NPDC1 EXD3 TMEM203 LOC100128593 FAM69B LCN12 CCDC183 TOR4A TMEM210 CCDC183-AS1 RNF224 EGFL7 C9orf173-AS1 RNF208 NDOR1 |
More Information
Additional Information:
For this assay, SNP(s) [rs116151678] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |