Assay Details
Target Gene Details
Entrez Gene ID: | 55326 |
Gene Name: | 1-acylglycerol-3-phosphate O-acyltransferase 5 |
Gene Aliases: |
1AGPAT5, LPAATE |
Location: |
Chr.8:6708357-6761503 on Build GRCh38 |
Assay Gene Location: | Within Intron 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
AGPAT5 | NM_018361.3 | NP_060831.2 | ||
XM_011534751.2 | XP_011533053.1 | |||
AF375789.1 | AAK54809.1 | |||
AK002072.1 | BAA92069.1 | |||
AK310545.1 | ||||
AL136587.1 | CAB66522.1 | |||
BC023550.2 | AAH23550.1 | |||
BC068519.1 | AAH68519.1 | |||
BC080537.1 | AAH80537.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1021684 | Chr.8:6492570 - 6951933 on Build GRCh38 | Loss | DEFA8P GS1-24F4.2 ANGPT2 MIR4659B MIR4659A MCPH1 DEFA6 MCPH1-AS1 AGPAT5 DEFB1 DEFA4 MIR8055 XKR5 |
nsv610004 | Chr.8:6544845 - 6915391 on Build GRCh38 | Gain | DEFB1 GS1-24F4.2 ANGPT2 MIR4659B MIR4659A MCPH1 MIR8055 XKR5 MCPH1-AS1 AGPAT5 |
nsv1025976 | Chr.8:6615427 - 6829450 on Build GRCh38 | Loss | MIR4659B MIR4659A MCPH1 MIR8055 XKR5 MCPH1-AS1 AGPAT5 |
esv2422383 | Chr.8:6504868 - 6924071 on Build GRCh38 | Duplication | DEFB1 GS1-24F4.2 ANGPT2 MIR4659B MIR4659A MCPH1 MIR8055 XKR5 MCPH1-AS1 AGPAT5 |
nsv831220 | Chr.8:6670324 - 6870969 on Build GRCh38 | Gain | DEFB1 GS1-24F4.2 MIR4659B MIR4659A XKR5 MCPH1-AS1 AGPAT5 |
nsv610006 | Chr.8:6710680 - 7063882 on Build GRCh38 | Gain | DEFT1P2 DEFT1P DEFA8P GS1-24F4.2 DEFA1B DEFA10P MIR4659B MIR4659A DEFA6 DEFA5 DEFA1 DEFA11P AGPAT5 DEFB1 DEFA7P DEFA4 DEFA3 DEFA9P XKR5 |
nsv1031577 | Chr.8:6712833 - 8008628 on Build GRCh38 | Gain | DEFA8P PRR23D2 DEFA10P LINC00965 DEFB107A MIR4659B DEFB108P1 DEFA6 SPAG11B DEFA5 DEFA7P DEFA3 FAM66E FAM66B DEFB109P1B DEFB107B LOC101929400 DEFB106B DEFA1B MIR4659A USP17L3 DEFB4A DEFA11P USP17L8 AGPAT5 DEFB104A DEFT1P2 LOC101928095 ZNF705B FAM90A7P USP17L4 DEFB106A SPAG11A DEFB1 DEFA4 LOC107986910 DEFB105A DEFB105B DEFA9P FAM90A10P OR7E154P DEFT1P DEFB4B GS1-24F4.2 DEFB103B DEFA1 DEFB103A ZNF705G OR7E125P XKR5 PRR23D1 DEFB104B USP17L1 |
dgv6876n100 | Chr.8:6687977 - 6812428 on Build GRCh38 | Loss | MIR4659B MIR4659A XKR5 MCPH1-AS1 AGPAT5 |
More Information
Additional Information:
For this assay, SNP(s) [rs116399443] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |