Assay Details
Target Gene Details
Entrez Gene ID: | 57491 |
Gene Name: | aryl-hydrocarbon receptor repressor |
Gene Aliases: |
AHH, AHHR, bHLHe77 |
Location: |
Chr.5:304176-438291 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
AHRR | NM_001242412.1 | NP_001229341.1 | ||
NM_020731.4 | NP_065782.2 | |||
AB033060.1 | ||||
BC151852.1 | ||||
BC152406.1 | ||||
EU293605.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2759315 | Chr.5:17263 - 595840 on Build GRCh38 | Loss | PLEKHG4B PDCD6 SLC9A3 PP7080 SDHA HRAT5 MIR4456 LRRC14B LOC100288152 AHRR EXOC3 CCDC127 EXOC3-AS1 |
esv3894107 | Chr.5:81322 - 801057 on Build GRCh38 | Gain | PLEKHG4B PDCD6 SLC9A3 PP7080 SDHA HRAT5 ZDHHC11B TPPP MIR4456 LRRC14B ZDHHC11 LOC100288152 AHRR CEP72 EXOC3 CCDC127 LOC101929895 LOC100996325 EXOC3-AS1 |
nsv428458 | Chr.5:93781 - 338972 on Build GRCh38 | Loss | PLEKHG4B PDCD6 CCDC127 SDHA HRAT5 LRRC14B AHRR |
esv2752083 | Chr.5:28951 - 346521 on Build GRCh38 | Gain | PLEKHG4B PDCD6 CCDC127 SDHA HRAT5 LRRC14B AHRR |
nsv1030767 | Chr.5:154674 - 457840 on Build GRCh38 | Gain | PLEKHG4B PDCD6 CCDC127 SDHA HRAT5 LRRC14B EXOC3-AS1 AHRR EXOC3 |
nsv461887 | Chr.5:299506 - 438449 on Build GRCh38 | Gain | PDCD6 AHRR |
nsv509041 | Chr.5:314395 - 438288 on Build GRCh38 | Insertion | PDCD6 AHRR |
More Information
Additional Information:
For this assay, SNP(s) [rs114623402] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |