Hs03498517_cn

• Gene Symbol: CNTN4
• Assay Reference Genome Location: Chr.3:3051518 on build GRCh38
• Cytoband: 3p26.2

Target Gene Details

• Entrez Gene ID: 152330
• Gene Name: contactin 4
• Gene Aliases: AXCAM, BIG-2
• Location: Chr.3:2098771-3059080 on Build GRCh38
• Assay Gene Location: Within Intron 31

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CNTN4	NM_001206955.1			NP_001193884.1
	NM_001206956.1			NP_001193885.1
	NM_175607.2			NP_783200.1
	NM_175613.2			NP_783302.1
	XM_006713004.3			XP_006713067.1
	XM_011533425.2			XP_011531727.1
	XM_011533426.2			XP_011531728.1
	XM_011533427.2			XP_011531729.1
	XM_011533428.2			XP_011531730.1
	XM_011533429.2			XP_011531731.1
	XM_011533430.2			XP_011531732.1
	XM_011533431.2			XP_011531733.1
	XM_017005782.1			XP_016861271.1
	XM_017005783.1			XP_016861272.1
	XM_017005784.1			XP_016861273.1
	XM_017005785.1			XP_016861274.1
	XM_017005786.1			XP_016861275.1
	XM_017005787.1			XP_016861276.1
	AF464063.1			AAN86141.1
	AF549455.1			AAP05786.1
	AK057278.1
	AK097633.1
	AK314396.1
	AY090737.1			AAM00025.1
	BC026119.1			AAH26119.1

Target Gene Details

• Entrez Gene ID: 100873975
• Gene Name: CNTN4 antisense RNA 1
• Gene Aliases: -
• Location: Chr.3:3039661-3061145 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CNTN4-AS1	NR_046554.1
	BM920658.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv589371	Chr.3:2170634 - 3594980 on Build GRCh38	Loss	CRBN IL5RA CNTN4-AS1 CNTN4 LOC100130207 TRNT1
esv2751994	Chr.3:2200757 - 3178886 on Build GRCh38	Gain	CRBN IL5RA CNTN4-AS1 CNTN4 TRNT1
esv2422274	Chr.3:2100396 - 3314907 on Build GRCh38	Duplication	CRBN IL5RA CNTN4-AS1 CNTN4 CNTN4-AS2 LOC100130207 TRNT1
nsv1011872	Chr.3:2782874 - 3057776 on Build GRCh38	Gain	CNTN4-AS1 CNTN4
nsv521796	Chr.3:3038825 - 3151219 on Build GRCh38	Loss	CRBN IL5RA CNTN4-AS1 CNTN4 TRNT1
dgv4636n100	Chr.3:2825734 - 3271845 on Build GRCh38	Gain	CRBN IL5RA CNTN4-AS1 CNTN4 LOC100130207 TRNT1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

neuron cell-cell adhesion
nervous system development
axonogenesis
axon guidance
axonal fasciculation
brain development
neuron projection development
negative regulation of neuron differentiation
regulation of synaptic plasticity