Assay Details
Target Gene Details
Entrez Gene ID: | 3680 |
Gene Name: | integrin subunit alpha 9 |
Gene Aliases: |
ALPHA-RLC, ITGA4L, RLC |
Location: |
Chr.3:37452322-37819790 on Build GRCh38 |
Assay Gene Location: | Within Intron 26 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGA9 | NM_002207.2 | NP_002198.2 | ||
D25303.1 | BAA04984.1 | |||
L24158.1 | AAA16099.1 |
Target Gene Details
Entrez Gene ID: | 101928153 |
Gene Name: | ITGA9 antisense RNA 1 |
Gene Aliases: |
- |
Location: |
Chr.3:37753689-37861780 on Build GRCh38 |
Assay Gene Location: | Within Intron 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGA9-AS1 | NR_110531.1 | |||
NR_110532.1 | ||||
DA501566.1 | ||||
HY121631.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv834666 | Chr.3:37705337 - 37887017 on Build GRCh38 | Gain+Loss | CTDSPL ITGA9 ITGA9-AS1 |
esv2759140 | Chr.3:37789992 - 38062733 on Build GRCh38 | Loss | CTDSPL PLCD1 ITGA9 VILL DLEC1 ITGA9-AS1 MIR26A1 |
nsv3765 | Chr.3:37756008 - 37801260 on Build GRCh38 | Deletion | ITGA9 ITGA9-AS1 |
nsv1160928 | Chr.3:37742341 - 37907632 on Build GRCh38 | Duplication | CTDSPL ITGA9 ITGA9-AS1 |
esv3595895 | Chr.3:37668483 - 37876957 on Build GRCh38 | Gain | CTDSPL ITGA9 ITGA9-AS1 |
esv3595887 | Chr.3:37319289 - 37878005 on Build GRCh38 | Gain | CTDSPL ITGA9 GOLGA4 ITGA9-AS1 C3orf35 |
More Information
Additional Information:
For this assay, SNP(s) [rs71323632,rs72862213] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |