Assay Details
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv4n111 | Chr.1:869076 - 914637 on Build GRCh38 | Duplication | FAM41C LOC284600 |
nsv1004962 | Chr.1:629241 - 915295 on Build GRCh38 | Gain | FAM87B LOC107984841 LOC284600 LINC01128 OR4F16 MTND2P28 LOC100133331 MIR6723 MTND1P23 LINC00115 FAM41C LOC100288069 LOC100287934 |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | SAMD11 MIR6859-1 RNF223 FNDC10 PUSL1 LOC729737 GABRD KLHL17 MIR200B NOC2L LOC100132287 TMEM88B ATAD3B ISG15 WASH7P LOC100288069 LOC105378947 MIR200A TMEM240 MIR6808 ATAD3A TTLL10 LOC100130417 LOC107985728 LOC100506504 LOC100129534 SKI FAAP20 CPSF3L LINC01342 LOC102725121 PRKCZ DDX11L1 C1orf159 NADK LOC284600 SCNN1D OR4F16 MTND2P28 LOC100134822 MMP23B ATAD3C MIR6859-2 OR4F5 DVL1 CPTP LOC102724312 LOC100287934 FAM87B MIR6726 SLC35E2B CALML6 CDK11A LOC100133331 PLEKHN1 MTND1P23 FAM41C ACAP3 MIR1302-2 B3GALT6 SSU72 LINC01128 LOC148413 MIR6723 MIB2 ANKRD65 FAM132A LINC00115 LOC105378591 MIR6727 PERM1 TNFRSF18 LOC101928626 SLC35E2 MRPL20 CFAP74 AURKAIP1 VWA1 TAS1R3 LOC105378949 HES4 LOC100288175 MORN1 TNFRSF4 MXRA8 SDF4 UBE2J2 LOC105378592 LOC107984841 MMP23A CDK11B OR4F29 FAM138A LOC107985729 LOC105378948 TTLL10-AS1 MIR429 TMEM52 GNB1 CCNL2 LOC105378589 AGRN |
nsv950451 | Chr.1:899421 - 1094520 on Build GRCh38 | Deletion | SAMD11 LOC100130417 LOC284600 LOC107985728 RNF223 PLEKHN1 HES4 ISG15 LOC105378948 LOC100288175 PERM1 AGRN KLHL17 C1orf159 NOC2L |
nsv509035 | Chr.1:891406 - 985724 on Build GRCh38 | Insertion | SAMD11 LOC100130417 PERM1 LOC284600 LOC107985728 PLEKHN1 KLHL17 NOC2L |
dgv1n67 | Chr.1:811028 - 914557 on Build GRCh38 | Gain | FAM87B LINC00115 FAM41C LOC284600 LINC01128 |
nsv1005935 | Chr.1:805477 - 915295 on Build GRCh38 | Gain | FAM87B LINC00115 FAM41C LOC284600 LINC01128 |
esv3584982 | Chr.1:837710 - 917284 on Build GRCh38 | Gain | FAM41C LOC100130417 LOC284600 LINC01128 |
nsv1009537 | Chr.1:841742 - 915295 on Build GRCh38 | Gain | FAM41C LOC284600 LINC01128 |
nsv428334 | Chr.1:874371 - 1220569 on Build GRCh38 | Gain | TTLL10 SAMD11 LOC100130417 LOC107985728 RNF223 PLEKHN1 HES4 LOC100288175 FAM41C TNFRSF4 LINC01342 SDF4 KLHL17 C1orf159 MIR200B NOC2L LOC284600 ISG15 LOC105378948 TTLL10-AS1 MIR429 PERM1 MIR200A AGRN TNFRSF18 |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | FAM87B MIR6726 SAMD11 SLC35E2B CDK11A RNF223 FNDC10 PLEKHN1 FAM41C PUSL1 ACAP3 KLHL17 B3GALT6 MIR200B NOC2L SSU72 LINC01128 LOC148413 TMEM88B ATAD3B ISG15 MIB2 ANKRD65 FAM132A LINC00115 MIR6727 LOC100288069 PERM1 MIR200A TMEM240 MIR6808 TNFRSF18 ATAD3A TTLL10 SLC35E2 MRPL20 LOC100130417 LOC107985728 AURKAIP1 VWA1 TAS1R3 HES4 CPSF3L LOC100288175 TNFRSF4 MXRA8 LINC01342 SDF4 UBE2J2 C1orf159 NADK LOC284600 SCNN1D MMP23A CDK11B MMP23B LOC107985729 ATAD3C LOC105378948 TTLL10-AS1 MIR429 DVL1 CPTP LOC102724312 CCNL2 LOC100287934 AGRN |
dgv5n100 | Chr.1:585989 - 1114424 on Build GRCh38 | Gain | FAM87B LOC101928626 SAMD11 LOC100130417 LOC107985728 RNF223 LOC100133331 PLEKHN1 HES4 LOC100288175 MTND1P23 FAM41C KLHL17 C1orf159 NOC2L LOC107984841 LOC284600 LINC01128 OR4F16 MTND2P28 MIR6723 ISG15 LOC105378948 LINC00115 LOC100288069 PERM1 LOC105378947 LOC100287934 AGRN |
nsv517709 | Chr.1:817186 - 1275912 on Build GRCh38 | Gain+Loss | FAM87B TTLL10 SAMD11 LOC100130417 LOC107985728 RNF223 PLEKHN1 HES4 LOC100288175 FAM41C TNFRSF4 LINC01342 SDF4 UBE2J2 KLHL17 B3GALT6 C1orf159 MIR200B NOC2L LOC284600 LINC01128 ISG15 LOC105378948 TTLL10-AS1 FAM132A LINC00115 MIR429 PERM1 MIR200A AGRN TNFRSF18 |
dgv1n111 | Chr.1:690090 - 939522 on Build GRCh38 | Duplication | FAM87B LOC107984841 SAMD11 LOC100130417 LOC284600 LOC107985728 LINC01128 OR4F16 LOC100133331 LINC00115 FAM41C LOC100288069 LOC100287934 |
dgv3n111 | Chr.1:783283 - 939522 on Build GRCh38 | Duplication | FAM87B SAMD11 LINC00115 FAM41C LOC100130417 LOC284600 LOC107985728 LINC01128 LOC100287934 |
dgv2n67 | Chr.1:877618 - 1426500 on Build GRCh38 | Gain | TTLL10 MIR6726 SAMD11 MRPL20 LOC100130417 LOC107985728 AURKAIP1 RNF223 TAS1R3 PLEKHN1 HES4 CPSF3L LOC100288175 TNFRSF4 PUSL1 MXRA8 LINC01342 ACAP3 SDF4 UBE2J2 KLHL17 B3GALT6 C1orf159 MIR200B NOC2L LOC284600 SCNN1D LOC148413 TMEM88B ISG15 LOC105378948 TTLL10-AS1 ANKRD65 FAM132A MIR6727 MIR429 DVL1 PERM1 CPTP MIR200A CCNL2 AGRN MIR6808 TNFRSF18 |
nsv832980 | Chr.1:848279 - 1007037 on Build GRCh38 | Gain | SAMD11 FAM41C LOC100130417 PERM1 LOC284600 LOC107985728 LINC01128 PLEKHN1 KLHL17 HES4 NOC2L |
esv3584976 | Chr.1:733250 - 914824 on Build GRCh38 | Gain | FAM87B LOC107984841 LINC00115 FAM41C LOC100288069 LOC284600 LINC01128 LOC100287934 |
More Information
Additional Information:
For this assay, SNP(s) [rs148658266] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intergenic/Unknown DGV Variation |