Assay Details
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv4n111 | Chr.1:869076 - 914637 on Build GRCh38 | Duplication | LOC284600 FAM41C |
nsv1004962 | Chr.1:629241 - 915295 on Build GRCh38 | Gain | OR4F16 MIR6723 LOC100287934 MTND2P28 LINC00115 LOC100133331 MTND1P23 LINC01128 LOC100288069 LOC107984841 LOC284600 FAM41C FAM87B |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | FNDC10 MXRA8 SLC35E2B OR4F5 B3GALT6 GABRD AGRN FAAP20 LINC00115 FAM132A LOC105378947 CALML6 LOC105378591 LOC100129534 LOC100506504 MIR6859-2 LINC01342 CPSF3L CPTP ATAD3B MIR6723 LOC102724312 TMEM88B RNF223 MIR6727 LOC100130417 LOC101928626 ACAP3 LOC105378948 LOC105378949 DDX11L1 LOC102725121 FAM138A SSU72 PLEKHN1 TMEM52 HES4 MMP23A LOC148413 SCNN1D LOC100133331 ISG15 LOC107984841 LOC107985728 LOC100288175 PRKCZ VWA1 MIR429 LOC105378589 FAM41C NADK TMEM240 OR4F29 ATAD3C CFAP74 SKI CDK11A UBE2J2 MIR200A MORN1 LOC100288069 LOC100134822 NOC2L MIR6808 OR4F16 PERM1 ATAD3A MIR6726 CDK11B MIR200B SLC35E2 LINC01128 TNFRSF4 WASH7P FAM87B CCNL2 TTLL10 C1orf159 AURKAIP1 MMP23B LOC105378592 GNB1 MTND2P28 MTND1P23 DVL1 TAS1R3 LOC107985729 TNFRSF18 ANKRD65 MIR6859-1 LOC100132287 LOC100287934 TTLL10-AS1 SAMD11 MRPL20 PUSL1 LOC729737 SDF4 MIB2 MIR1302-2 KLHL17 LOC284600 |
nsv950451 | Chr.1:899421 - 1094520 on Build GRCh38 | Deletion | LOC100130417 LOC107985728 LOC100288175 NOC2L LOC105378948 C1orf159 PERM1 SAMD11 PLEKHN1 AGRN HES4 RNF223 ISG15 KLHL17 LOC284600 |
nsv509035 | Chr.1:891406 - 985724 on Build GRCh38 | Insertion | LOC100130417 LOC107985728 NOC2L PERM1 KLHL17 SAMD11 LOC284600 PLEKHN1 |
dgv1n67 | Chr.1:811028 - 914557 on Build GRCh38 | Gain | LINC00115 LINC01128 LOC284600 FAM41C FAM87B |
nsv1005935 | Chr.1:805477 - 915295 on Build GRCh38 | Gain | LINC00115 LINC01128 LOC284600 FAM41C FAM87B |
esv3584982 | Chr.1:837710 - 917284 on Build GRCh38 | Gain | LOC100130417 LINC01128 LOC284600 FAM41C |
nsv1009537 | Chr.1:841742 - 915295 on Build GRCh38 | Gain | LINC01128 LOC284600 FAM41C |
nsv428334 | Chr.1:874371 - 1220569 on Build GRCh38 | Gain | LOC100130417 TTLL10 LOC105378948 C1orf159 PLEKHN1 AGRN HES4 MIR200A ISG15 LINC01342 LOC107985728 LOC100288175 NOC2L TNFRSF18 PERM1 TTLL10-AS1 SAMD11 MIR200B SDF4 MIR429 RNF223 KLHL17 LOC284600 FAM41C TNFRSF4 |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | FNDC10 MXRA8 TMEM240 SLC35E2B B3GALT6 ATAD3C AGRN CDK11A LINC00115 UBE2J2 MIR200A FAM132A LOC100288069 LINC01342 NOC2L CPSF3L MIR6808 CPTP PERM1 ATAD3B ATAD3A LOC102724312 MIR6726 CDK11B MIR200B TMEM88B SLC35E2 RNF223 LINC01128 TNFRSF4 FAM87B MIR6727 LOC100130417 CCNL2 TTLL10 ACAP3 LOC105378948 C1orf159 AURKAIP1 MMP23B SSU72 PLEKHN1 HES4 MMP23A LOC148413 SCNN1D ISG15 DVL1 TAS1R3 LOC107985729 LOC107985728 LOC100288175 TNFRSF18 ANKRD65 LOC100287934 VWA1 TTLL10-AS1 SAMD11 MRPL20 PUSL1 SDF4 MIR429 MIB2 KLHL17 LOC284600 FAM41C NADK |
dgv5n100 | Chr.1:585989 - 1114424 on Build GRCh38 | Gain | LOC100130417 LOC101928626 LOC105378948 C1orf159 MTND2P28 PLEKHN1 AGRN HES4 LINC00115 LOC105378947 LOC100133331 ISG15 MTND1P23 LOC100288069 LOC107984841 LOC107985728 LOC100288175 NOC2L OR4F16 PERM1 MIR6723 LOC100287934 SAMD11 RNF223 LINC01128 KLHL17 LOC284600 FAM41C FAM87B |
nsv517709 | Chr.1:817186 - 1275912 on Build GRCh38 | Gain+Loss | LOC100130417 TTLL10 LOC105378948 B3GALT6 C1orf159 PLEKHN1 AGRN HES4 LINC00115 UBE2J2 MIR200A FAM132A ISG15 LINC01342 LOC107985728 LOC100288175 NOC2L TNFRSF18 PERM1 TTLL10-AS1 SAMD11 MIR200B SDF4 MIR429 RNF223 LINC01128 KLHL17 LOC284600 FAM41C TNFRSF4 FAM87B |
dgv1n111 | Chr.1:690090 - 939522 on Build GRCh38 | Duplication | LOC100130417 LOC107985728 OR4F16 LOC100287934 SAMD11 LINC00115 LOC100133331 LINC01128 LOC100288069 LOC107984841 LOC284600 FAM41C FAM87B |
dgv3n111 | Chr.1:783283 - 939522 on Build GRCh38 | Duplication | LOC100130417 LOC107985728 LINC00115 LINC01128 LOC100287934 SAMD11 LOC284600 FAM41C FAM87B |
dgv2n67 | Chr.1:877618 - 1426500 on Build GRCh38 | Gain | MIR6727 LOC100130417 CCNL2 TTLL10 MXRA8 ACAP3 LOC105378948 B3GALT6 C1orf159 AURKAIP1 PLEKHN1 AGRN HES4 LOC148413 UBE2J2 MIR200A FAM132A SCNN1D ISG15 DVL1 TAS1R3 LINC01342 LOC107985728 LOC100288175 NOC2L TNFRSF18 CPSF3L MIR6808 ANKRD65 CPTP PERM1 TTLL10-AS1 SAMD11 MRPL20 PUSL1 MIR6726 MIR200B SDF4 TMEM88B MIR429 RNF223 KLHL17 LOC284600 TNFRSF4 |
nsv832980 | Chr.1:848279 - 1007037 on Build GRCh38 | Gain | LOC100130417 LOC107985728 NOC2L PERM1 LINC01128 KLHL17 SAMD11 LOC284600 FAM41C PLEKHN1 HES4 |
esv3584976 | Chr.1:733250 - 914824 on Build GRCh38 | Gain | LINC00115 LINC01128 LOC100287934 LOC100288069 LOC107984841 LOC284600 FAM41C FAM87B |
More Information
Additional Information:
For this assay, SNP(s) [rs114464092] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intergenic/Unknown DGV Variation |