Assay Details
Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SCAF1 | NM_021228.2 | 7 | 3069 | NP_067051.2 |
XM_005259122.4 | 7 | 3352 | XP_005259179.1 | |
XM_011527194.2 | 7 | 2994 | XP_011525496.1 | |
XM_017027083.1 | 4 | 2796 | XP_016882572.1 | |
AK024444.1 | 7 | 3069 | ||
BC011662.2 | AAH11662.2 | |||
BC018398.1 | 1 | 460 | AAH18398.1 | |
BC053992.1 | 6 | 2956 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss | ADM5 CPT1C PRR12 MIR5088 BCL2L12 PRRG2 IRF3 PRMT1 NOSIP RRAS SCAF1 |
nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss | ADM5 CPT1C PRR12 MIR5088 BCL2L12 PRRG2 IRF3 PRMT1 NOSIP RRAS SCAF1 |
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | SNAR-B1 LOC105447645 RCN3 SPHK2 SYNGR4 BCL2L12 LOC105372430 FUT2 FCGRT PIH1D1 CA11 MIR4751 C19orf73 IZUMO1 CGB5 SNAR-A3 CGB3 SNAR-B2 RUVBL2 GFY CYTH2 C19orf68 SNAR-D IRF3 FUT1 SNORD32A NUP62 FGF21 GRWD1 ELSPBP1 SNRNP70 GRIN2D PLA2G4C-AS1 MIR6798 EMP3 MIR6799 MIR4749 SNAR-G1 SNAR-A10 TEAD2 PTOV1-AS1 CGB2 FUZ SNORD35A CD37 CABP5 SNAR-C4 MIR5088 PTOV1 SLC6A16 SPACA4 SNAR-C5 FAM83E ADM5 LIG1 PRR12 CARD8-AS1 DBP CCDC155 FLJ26850 LOC101059948 PRMT1 LIN7B IL4I1 AKT1S1 SNAR-A11 CPT1C DHDH ZNF473 BSPH1 SNAR-A5 HRC PLA2G4C BAX PPFIA3 VRK3 LMTK3 SNAR-A14 KCNA7 MAMSTR CGB8 SIGLEC16 ATF5 LHB CGB1 SNAR-A13 FTL SNAR-A6 SNAR-A1 PTH2 TMEM143 SNAR-A7 NTN5 SNAR-C2 CGB7 LOC101928295 SNAR-A8 SNAR-A2 LOC100287477 SNORD33 SNORD35B MED25 RPL18 NTF4 RASIP1 NOSIP PTOV1-AS2 NUCB1-AS1 HSD17B14 AP2A1 SCAF1 MIR150 TRPM4 SNORD34 SNAR-A12 SNAR-G2 SEC1P FLT3LG SIGLEC11 DKKL1 SULT2B1 NUCB1 TULP2 MIR4750 TSKS PPP1R15A ZNF114 KDELR1 PNKP GYS1 PLEKHA4 RPS11 CCDC114 SNAR-A9 PRRG2 SNAR-C1 CARD8 BCAT2 SNAR-A4 MIR6800 TBC1D17 RPL13A RRAS MIR4324 SNAR-C3 ALDH16A1 SLC17A7 KCNJ14 |
nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain | ADM5 CPT1C PRR12 MIR5088 BCL2L12 IRF3 PRMT1 RRAS SCAF1 |
nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss | IRF3 SCAF1 |
nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion | PTOV1-AS1 BCL2L12 MIR4750 ATF5 FUZ TSKS MIR4751 MIR5088 PNKP PTOV1 ADM5 PRR12 MED25 PRRG2 IRF3 PRMT1 IL4I1 NUP62 NOSIP PTOV1-AS2 AP2A1 AKT1S1 SCAF1 CPT1C MIR6800 MIR6799 TBC1D17 MIR4749 RRAS |
nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain | ADM5 CPT1C PRR12 MIR5088 BCL2L12 PRRG2 IRF3 PRMT1 NOSIP RRAS SCAF1 |
nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion | PTOV1-AS1 RCN3 BCL2L12 FCGRT FUZ SNORD35A TSKS MIR5088 RPS11 ADM5 PRR12 SNORD33 SNORD35B MED25 PRRG2 IRF3 PRMT1 SNORD32A NOSIP AP2A1 SCAF1 CPT1C MIR150 MIR6800 SNORD34 MIR6799 RPL13A RRAS |
nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss | PRR12 BCL2L12 PRRG2 IRF3 PRMT1 NOSIP RRAS SCAF1 |
nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss | IRF3 SCAF1 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |