Hs02798722_cn

• Gene Symbol: PCDHGA1
• Assay Reference Genome Location: Chr.5:141395023 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56114
• Gene Name: protocadherin gamma subfamily A, 1
• Gene Aliases: PCDH-GAMMA-A1
• Location: Chr.5:141330685-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA1	NM_018912.2			NP_061735.1
	AF152318.1			AAD43712.1

Target Gene Details

• Entrez Gene ID: 56113
• Gene Name: protocadherin gamma subfamily A, 2
• Gene Aliases: PCDH-GAMMA-A2
• Location: Chr.5:141338760-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA2	NM_018915.3			NP_061738.1
	AF152322.1			AAD43716.1

Target Gene Details

• Entrez Gene ID: 56112
• Gene Name: protocadherin gamma subfamily A, 3
• Gene Aliases: PCDH-GAMMA-A3
• Location: Chr.5:141344034-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA3	NM_018916.3			NP_061739.2
	AB208927.1			BAD92164.1
	AF152323.1			AAD43717.1

Target Gene Details

• Entrez Gene ID: 56111
• Gene Name: protocadherin gamma subfamily A, 4
• Gene Aliases: PCDH-GAMMA-A4
• Location: Chr.5:141355025-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA4	NM_018917.3			NP_061740.2
	AF152324.1			AAD43718.1

Target Gene Details

• Entrez Gene ID: 56110
• Gene Name: protocadherin gamma subfamily A, 5
• Gene Aliases: CDH-GAMMA-A5, ME3, PCDH-GAMMA-A5
• Location: Chr.5:141364331-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA5	NM_018918.2			NP_061741.1
	AF152325.1			AAD43719.1

Target Gene Details

• Entrez Gene ID: 56109
• Gene Name: protocadherin gamma subfamily A, 6
• Gene Aliases: PCDH-GAMMA-A6
• Location: Chr.5:141374084-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA6	NM_018919.2			NP_061742.1
	AB209178.1			BAD92415.1
	AF152326.1			AAD43720.1
	BC146651.1

Target Gene Details

• Entrez Gene ID: 56108
• Gene Name: protocadherin gamma subfamily A, 7
• Gene Aliases: PCDH-GAMMA-A7
• Location: Chr.5:141382739-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA7	NM_018920.3			NP_061743.1
	AB208958.1			BAD92195.1
	AF152327.1			AAD43721.1

Target Gene Details

• Entrez Gene ID: 9708
• Gene Name: protocadherin gamma subfamily A, 8
• Gene Aliases: PCDH-GAMMA-A8
• Location: Chr.5:141391916-141512979 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA8	NM_014004.2	1	3108	NP_054723.1
	NM_032088.1	1	3108	NP_114477.1
	AB002325.1	1	4867
	AF152328.1	1	2210	AAD43722.1
	AF152515.1	1	2210	AAD43775.1
	BC152415.1	1	4867

Target Gene Details

• Entrez Gene ID: 56104
• Gene Name: protocadherin gamma subfamily B, 1
• Gene Aliases: PCDH-GAMMA-B1
• Location: Chr.5:141350261-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB1	NM_018922.2			NP_061745.1
	AF152330.1			AAD43724.1

Target Gene Details

• Entrez Gene ID: 56103
• Gene Name: protocadherin gamma subfamily B, 2
• Gene Aliases: PCDH-GAMMA-B2
• Location: Chr.5:141360136-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB2	NM_018923.2			NP_061746.1
	AF152331.1			AAD43725.1

Target Gene Details

• Entrez Gene ID: 56102
• Gene Name: protocadherin gamma subfamily B, 3
• Gene Aliases: PCDH-GAMMA-B3
• Location: Chr.5:141370264-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB3	NM_018924.4			NP_061747.2
	AF152332.1			AAD43726.1
	BC150172.1

Target Gene Details

• Entrez Gene ID: 8641
• Gene Name: protocadherin gamma subfamily B, 4
• Gene Aliases: CDH20, FIB2, PCDH-GAMMA-B4
• Location: Chr.5:141387885-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB4	NM_003736.2			NP_003727.1
	AF152333.1			AAD43727.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB17P PCDHGA2 PCDHB15 PCDHB13 PCDHB14 PCDHA4 PCDHA10 PCDHB9 PCDHA5 PCDHB6 PCDHA11 PCDHB1 PCDHB4 PCDHGA1 PCDHGB2 PCDHGB1 PCDHA3 TAF7 PCDHGB3 PCDHA9 SLC25A2 PCDHA12 PCDHB7 PCDHGA7 PCDHGA6 PCDHGB7 PCDHB8 PCDHGA3 PCDHAC1 PCDHA7 PCDHB5 PCDHB10 PCDHGA5 PCDHGB5 PCDHGA9 PCDHGB4 PCDHA2 LOC101926905 PCDHB3 PCDHGA8 PCDHA8 PCDHB18P PCDHA6 PCDHB12 PCDHAC2 PCDHB16 PCDHB11 PCDHA1 PCDHGB6 PCDHB19P PCDHGA10 PCDHGA11 PCDHGA4 PCDHA13 PCDHGB8P PCDHGA12 PCDHB2
esv3606985	Chr.5:141389770 - 141397963 on Build GRCh38	Gain	PCDHGA7 PCDHGA6 PCDHGA8 PCDHGA2 PCDHGA5 PCDHGA4 PCDHGA3 PCDHGB3 PCDHGA1 PCDHGB4 PCDHGB2 PCDHGB1
nsv599922	Chr.5:141341879 - 141416532 on Build GRCh38	Loss	PCDHGA2 PCDHGA5 PCDHGB5 PCDHGA9 PCDHGB3 PCDHGB4 PCDHGB6 PCDHGA10 PCDHGA7 PCDHGA6 PCDHGA8 PCDHGA4 PCDHGA3 PCDHGA1 PCDHGB2 PCDHGB1
nsv823280	Chr.5:141388318 - 141397872 on Build GRCh38	Loss	PCDHGA7 PCDHGA6 PCDHGA8 PCDHGA2 PCDHGA5 PCDHGA4 PCDHGA3 PCDHGB3 PCDHGA1 PCDHGB4 PCDHGB2 PCDHGB1
nsv519627	Chr.5:141392860 - 141427689 on Build GRCh38	Loss	PCDHGA2 PCDHGA5 PCDHGB5 PCDHGA9 PCDHGB3 PCDHGB4 PCDHGB6 PCDHGA10 PCDHGA11 PCDHGA7 PCDHGA6 PCDHGB7 PCDHGA8 PCDHGA4 PCDHGA3 PCDHGA1 PCDHGB8P PCDHGB2 PCDHGB1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
endosome to lysosome transport
lipid tube assembly involved in organelle fusion
cell adhesion
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Function(s)

calcium ion binding