Assay Details
Target Gene Details
Entrez Gene ID: | 89958 |
Gene Name: | suppressor APC domain containing 2 |
Gene Aliases: |
C9orf140, p42.3 |
Location: |
Chr.9:137062127-137070576 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 2 - Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SAPCD2 | NM_178448.3 | NP_848543.2 | ||
XM_011519180.2 | XP_011517482.1 | |||
BC048267.1 | AAH48267.1 | |||
BX332104.2 | ||||
DQ150361.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv13007n54 | Chr.9:136966179 - 137173890 on Build GRCh38 | Loss | C9orf142 MAN1B1-AS1 PRR31 PTGDS ENTPD2 MAN1B1 CLIC3 DPP7 LCNL1 FUT7 TMEM210 LOC101930307 MIR3621 ABCA2 UAP1L1 C9orf139 LRRC26 SAPCD2 GRIN1 NPDC1 |
nsv831761 | Chr.9:137049674 - 137166473 on Build GRCh38 | Loss | MAN1B1-AS1 DPP7 LOC101930307 UAP1L1 ENTPD2 MAN1B1 SAPCD2 GRIN1 |
nsv616006 | Chr.9:137057859 - 137083633 on Build GRCh38 | Loss | UAP1L1 SAPCD2 |
nsv524322 | Chr.9:136795692 - 137482216 on Build GRCh38 | Loss | MAN1B1-AS1 ANAPC2 PRR31 PTGDS FBXW5 PHPT1 NELFB CLIC3 RNF208 DPP7 FUT7 UAP1L1 TRAF2 C9orf173-AS1 C8G C9orf142 ENTPD8 PNPLA7 LCNL1 NSMF NDOR1 C9orf172 SAPCD2 GRIN1 TUBB4B EDF1 MIR7114 NRARP ENTPD2 MAN1B1 MIR4479 NOXA1 SLC34A3 STPG3 MIR4292 RABL6 CCDC183 CYSRT1 SSNA1 LOC101930307 MIR3621 LRRC26 MAMDC4 NPDC1 CCDC183-AS1 EXD3 TOR4A LCN12 RNF224 TMEM210 ABCA2 C9orf139 FAM166A TPRN TMEM203 |
nsv951206 | Chr.9:136944849 - 137114548 on Build GRCh38 | Deletion | C9orf142 MAN1B1-AS1 PRR31 PTGDS ENTPD2 MAN1B1 LCN12 CLIC3 DPP7 LCNL1 FUT7 LOC101930307 ABCA2 UAP1L1 C9orf139 SAPCD2 C8G NPDC1 |
nsv469918 | Chr.9:136359865 - 137173890 on Build GRCh38 | Loss | MAN1B1-AS1 FAM69B PRR31 LCN6 LCN10 PTGDS FBXW5 LINC01451 CARD9 SNORA17A PHPT1 CLIC3 DPP7 FUT7 UAP1L1 TRAF2 C8G C9orf142 SEC16A DNLZ C9orf163 LCNL1 C9orf172 EGFL7 SAPCD2 GRIN1 EDF1 MIR126 PMPCA INPP5E ENTPD2 MAN1B1 LCN15 MIR4479 SNAPC4 HSPC324 LOC100128593 MIR4292 RABL6 CCDC183 LOC101930307 MIR3621 LRRC26 NOTCH1 MAMDC4 TMEM141 NPDC1 SNORA17B CCDC183-AS1 LCN8 AGPAT2 MIR6722 LCN12 MIR4674 NALT1 TMEM210 ABCA2 C9orf139 MIR4673 SDCCAG3 SNHG7 |
nsv616005 | Chr.9:137036493 - 137173890 on Build GRCh38 | Loss | MAN1B1-AS1 ENTPD2 MAN1B1 DPP7 TMEM210 LOC101930307 MIR3621 UAP1L1 C9orf139 LRRC26 SAPCD2 GRIN1 NPDC1 |
esv2761561 | Chr.9:137030185 - 137191593 on Build GRCh38 | Gain | MAN1B1-AS1 ANAPC2 ENTPD2 MAN1B1 DPP7 FUT7 TMEM210 SSNA1 LOC101930307 MIR3621 UAP1L1 C9orf139 LRRC26 SAPCD2 GRIN1 NPDC1 |
esv2422220 | Chr.9:136584135 - 137350098 on Build GRCh38 | Deletion | MAN1B1-AS1 FAM69B ANAPC2 PRR31 LCN6 LCN10 PTGDS FBXW5 LINC01451 SNORA17A PHPT1 NELFB CLIC3 RNF208 DPP7 FUT7 UAP1L1 TRAF2 C9orf173-AS1 C8G C9orf142 LCNL1 NDOR1 C9orf172 EGFL7 SAPCD2 GRIN1 TUBB4B EDF1 MIR126 NRARP ENTPD2 MAN1B1 LCN15 MIR4479 HSPC324 SLC34A3 STPG3 LOC100128593 MIR4292 RABL6 CCDC183 CYSRT1 SSNA1 LOC101930307 MIR3621 LRRC26 MAMDC4 TMEM141 NPDC1 SNORA17B CCDC183-AS1 LCN8 AGPAT2 EXD3 TOR4A MIR6722 LCN12 RNF224 TMEM210 ABCA2 C9orf139 FAM166A TPRN TMEM203 SNHG7 |
nsv982354 | Chr.9:137057355 - 137073859 on Build GRCh38 | Duplication | SAPCD2 |