Assay Details
Target Gene Details
Entrez Gene ID: | 57099 |
Gene Name: | apoptosis and caspase activation inhibitor |
Gene Aliases: |
PDCD12 |
Location: |
Chr.15:33858602-34074877 on Build GRCh38 |
Assay Gene Location: |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
AVEN |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv471235 | Chr.15:33743328 - 34129750 on Build GRCh38 | Gain | PGBD4 CHRM5 EMC7 RYR3 AVEN |
nsv1052620 | Chr.15:32612402 - 34538731 on Build GRCh38 | Gain | FMN1 MIR1233-1 LPCAT4 SLC12A6 SCG5 LOC100131315 LOC101928042 EMC7 RYR3 GREM1 GOLGA8B TMCO5B MIR1233-2 EMC4 KATNBL1 PGBD4 CHRM5 ARHGAP11A NOP10 NUTM1 AVEN LOC105370757 LOC101928134 GOLGA8A |
esv33337 | Chr.15:31689863 - 34575097 on Build GRCh38 | Gain+Loss | LPCAT4 LOC100131315 LOC101928042 EMC7 RYR3 GOLGA8B GOLGA8N WHAMMP1 GOLGA8K LOC100996255 ULK4P1 AVEN LOC101928134 GOLGA8A FMN1 MIR1233-1 SLC12A6 SCG5 CHRNA7 LOC101060588 GOLGA8O GREM1 TMCO5B MIR1233-2 EMC4 KATNBL1 PGBD4 CHRM5 ARHGAP11A NOP10 NUTM1 LOC100653133 LOC105370757 LOC105370940 |
nsv568921 | Chr.15:33754434 - 33955421 on Build GRCh38 | Gain | RYR3 AVEN |
esv3569431 | Chr.15:33564570 - 35080307 on Build GRCh38 | Gain | LOC101928174 MIR1233-1 LPCAT4 SLC12A6 EMC7 RYR3 GOLGA8B MIR1233-2 EMC4 AQR KATNBL1 PGBD4 CHRM5 GJD2 NOP10 ZNF770 NUTM1 AVEN GOLGA8A ACTC1 |
nsv1044844 | Chr.15:33773323 - 34004628 on Build GRCh38 | Loss | CHRM5 RYR3 AVEN |
nsv568920 | Chr.15:33742220 - 34134417 on Build GRCh38 | Gain | PGBD4 CHRM5 EMC7 RYR3 AVEN |
dgv4456n54 | Chr.15:32604149 - 34557061 on Build GRCh38 | Gain | LPCAT4 LOC100131315 LOC101928042 EMC7 RYR3 GOLGA8B GOLGA8N AVEN LOC101928134 GOLGA8A FMN1 MIR1233-1 SLC12A6 SCG5 GREM1 TMCO5B MIR1233-2 EMC4 KATNBL1 PGBD4 CHRM5 ARHGAP11A NOP10 NUTM1 LOC105370757 |
More Information
Additional Information:
For this assay, SNP(s) [rs116671589] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |