Assay Details
Target Gene Details
Entrez Gene ID: | 55911 |
Gene Name: | apolipoprotein B receptor |
Gene Aliases: |
APOB100R, APOB48R |
Location: |
Chr.16:28494649-28498970 on Build GRCh38 |
Assay Gene Location: | Within Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
APOBR | NM_018690.3 | 2 | 648 | NP_061160.3 |
AF141332.1 | 2 | 625 | AAF76255.1 | |
AF141334.1 | 2 | 625 | AAF78765.1 | |
BC119786.1 | 2 | 625 | ||
BC119788.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv509608 | Chr.16:28449797 - 28632895 on Build GRCh38 | Insertion | SULT1A2 SULT1A1 CLN3 NUPR1 SGF29 IL27 APOBR |
esv2758640 | Chr.16:28163817 - 29139232 on Build GRCh38 | Gain+Loss | SULT1A2 MIR6862-2 MIR4517 SGF29 SBK1 LAT SPNS1 ATP2A1 MIR6862-1 NPIP RABEP2 NPIPB9 SH2B1 XPO6 MIR4721 CLN3 CD19 TUFM NPIPB8 ATXN2L NUPR1 APOBR EIF3CL LOC101928215 EIF3C NFATC2IP SULT1A1 NPIPB6 ATP2A1-AS1 IL27 RRN3P2 |
nsv1059555 | Chr.16:28373144 - 29195838 on Build GRCh38 | Gain | SULT1A2 LOC107984832 MIR6862-2 MIR4517 SGF29 LAT SPNS1 ATP2A1 MIR6862-1 NPIP RABEP2 NPIPB9 SH2B1 MIR4721 CLN3 CD19 TUFM NPIPB8 ATXN2L NUPR1 APOBR EIF3CL LOC101928215 EIF3C NFATC2IP SULT1A1 ATP2A1-AS1 IL27 RRN3P2 |
nsv833180 | Chr.16:28346157 - 28574165 on Build GRCh38 | Loss | CLN3 NPIPB6 NUPR1 SGF29 IL27 MIR6862-1 APOBR EIF3CL |
nsv9415 | Chr.16:28468881 - 28498959 on Build GRCh38 | Gain | CLN3 APOBR |
More Information
Additional Information:
For this assay, SNP(s) [rs113462555] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |