Assay Details
Target Gene Details
Entrez Gene ID: | 84231 |
Gene Name: | TNF receptor associated factor 7 |
Gene Aliases: |
RFWD1, RNF119 |
Location: |
Chr.16:2155752-2178129 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 12 - Exon 13 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRAF7 | NM_032271.2 | NP_115647.2 | ||
XM_005255627.4 | XP_005255684.1 | |||
XM_011522700.1 | XP_011521002.1 | |||
AK090624.1 | ||||
AL136921.1 | CAB66855.1 | |||
AY569455.1 | AAS68363.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | SNORA64 ARHGDIG MIR4516 TPSB2 NME4 WDR24 SNORA10 SOX8 WASIR2 PGP CRAMP1 CAPN15 LOC100134368 RNPS1 ECI1 MIR6768 LOC106660606 METRN EME2 CHTF18 IFT140 LMF1 TBL3 LOC101929280 MIR3177 DECR2 LOC652276 LOC100287175 CACNA1H SNHG19 TSC2 LINC00254 METTL26 HBA2 CLCN7 HBZ TMEM8A SSTR5-AS1 SNHG9 KCTD5 BAIAP3 HBQ1 LOC105371047 HS3ST6 E4F1 SNORD60 BRICD5 RGS11 TELO2 POLR3K PDPK1 SYNGR3 SSTR5 FAM234A FAHD1 MIR940 MEIOB NDUFB10 FBXL16 MIR3178 MCRIP2 UBE2I CCDC78 PRR25 HBA1 LINC00235 IGFALS HAGHL ABCA3 SPSB3 TRAF7 MRPS34 NARFL HN1L SNRNP25 MIR3176 NTN3 CASKIN1 RAB40C TPSG1 MAPK8IP3 TPSD1 PIGQ PTX4 C16orf59 MIR6511B1 MSLN ZNF598 FLJ42627 PKD1 NME3 LOC105371045 HAGH RHBDL1 RPUSD1 RHBDF1 C16orf91 LOC729652 PRSS27 TMEM204 GFER LOC105371184 MIR1225 GNPTG MRPL28 MIR3180-5 ABCA17P RPL23AP5 RNF151 MIR6767 WDR90 DDX11L10 PDIA2 SLC9A3R2 LOC105371049 LMF1-AS1 NOXO1 AXIN1 STUB1 TSR3 CCDC154 JMJD8 MIR4717 DNASE1L2 AMDHD2 LUC7L RPS2 NUBP2 NPRL3 PRSS29P RAB11FIP3 HBM NPW GNG13 RHOT2 MIR662 UNKL RPL3L CEMP1 CCNF LOC107987233 MLST8 NHLRC4 MIR5587 RAB26 WFIKKN1 LOC105371046 SNORA78 LOC107984876 MSRB1 MPG NTHL1 PRR35 FAM173A ATP6V0C LOC105371038 C1QTNF8 TBC1D24 MIR6859-4 ERVK13-1 TPSAB1 MIR3677 |
nsv471072 | Chr.16:1971892 - 2317508 on Build GRCh38 | Loss | MIR4516 CASKIN1 SLC9A3R2 LOC105371049 NOXO1 PGP MIR6511B1 E4F1 MIR4717 SNORD60 DNASE1L2 ZNF598 BRICD5 PKD1 RNPS1 ECI1 NPW LOC106660606 MLST8 SYNGR3 TBL3 MIR940 RAB26 GFER SNHG19 MIR1225 TSC2 MIR3180-5 NTHL1 ABCA3 TRAF7 MIR3677 |
dgv4861n54 | Chr.16:2083900 - 2246850 on Build GRCh38 | Loss | MIR4516 RAB26 CASKIN1 SNHG19 MIR1225 LOC105371049 TSC2 MIR3180-5 PGP MIR6511B1 E4F1 SNORD60 DNASE1L2 BRICD5 PKD1 ECI1 TRAF7 MLST8 |
dgv4863n54 | Chr.16:2141733 - 2274302 on Build GRCh38 | Loss | MIR940 RAB26 CASKIN1 SNHG19 PGP E4F1 SNORD60 DNASE1L2 BRICD5 RNPS1 ECI1 TRAF7 LOC106660606 MLST8 MIR3677 |
nsv457349 | Chr.16:2055054 - 2200730 on Build GRCh38 | Loss | PKD1 MIR4516 RAB26 CASKIN1 SNHG19 MIR1225 TRAF7 LOC105371049 TSC2 MIR3180-5 MIR6511B1 SNORD60 |
nsv457351 | Chr.16:2156590 - 2274302 on Build GRCh38 | Loss | MIR940 BRICD5 RNPS1 CASKIN1 ECI1 TRAF7 LOC106660606 MLST8 PGP E4F1 DNASE1L2 MIR3677 |
nsv1052260 | Chr.16:2074546 - 2629655 on Build GRCh38 | Gain | MIR4516 CASKIN1 LOC105371049 C16orf59 PGP MIR6511B1 E4F1 MIR4717 SNORD60 DNASE1L2 AMDHD2 BRICD5 PKD1 RNPS1 ECI1 MIR6768 LOC106660606 CEMP1 CCNF PDPK1 MLST8 MIR940 LOC729652 LOC652276 RAB26 SNHG19 MIR1225 MIR3178 TSC2 MIR3180-5 ABCA17P ABCA3 TRAF7 MIR6767 ATP6V0C TBC1D24 MIR3677 NTN3 |
nsv952902 | Chr.16:2143400 - 2339999 on Build GRCh38 | Deletion | MIR940 RAB26 CASKIN1 SNHG19 PGP E4F1 MIR4717 SNORD60 DNASE1L2 BRICD5 RNPS1 ECI1 ABCA3 TRAF7 LOC106660606 MLST8 MIR3677 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |